David Schaffer

Dr. David Schaffer

orcid

Research Focus & Metrics

Academic Career Length

21Years (2006-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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1 October 2016 in Neuron
Verified
Journal Article
Closed access
DTD. Gowanlock R. Tervo
D. Gowanlock R. Tervo
BHBum-Yeol Hwang
Bum-Yeol Hwang
SVSarada Viswanathan
Sarada Viswanathan
TGThomas Gaj
Thomas Gaj
MLMaria Lavzin
Maria Lavzin
AKAlla Y. Karpova
Alla Y. Karpova

1 November 2008 in Biophysical Journal
Verified
Journal Article
Closed access
PDF file
KSKrishanu Saha
Krishanu Saha
AKAlbert J. Keung
Albert J. Keung
EIElizabeth F. Irwin
Elizabeth F. Irwin
YLYang Li
Yang Li
LLLauren Little
Lauren Little
KHKevin E. Healy
Kevin E. Healy

12 June 2013 in Science Translational Medicine
Verified
Journal Article
Closed access
PDF file
DDDeniz Dalkara
Deniz Dalkara
LBLeah C. Byrne
Leah C. Byrne
RKRyan R. Klimczak
Ryan R. Klimczak
MVMeike Visel
Meike Visel
LYLu Yin
Lu Yin
DSDavid Schaffer
David Schaffer
Injection of a new gene therapy vector into the easily accessible vitreous transduced the entire retina and rescued disease phenotypes.

20 May 2014 in Nature Reviews Genetics
Verified
Journal Article
Closed access
PDF file
MKMelissa A. Kotterman
Melissa A. Kotterman
DSDavid Schaffer
David Schaffer

1 June 2014 in Nature Methods
Verified
Journal Article
Open access
PDF file
AHAlex J Hughes
Alex J Hughes
DSDawn P Spelke
Dawn P Spelke
ZXZhuchen Xu
Zhuchen Xu
CKChi-Chih Kang
Chi-Chih Kang
DSDavid Schaffer
David Schaffer
AHAmy E Herr
Amy E Herr
A single-cell Western (scWestern) blotting technique allows quantitative measurements of up to 11 protein targets from ~2,000 individual cells in under 4 hours, expanding single-cell heterogeneity studies to the proteome. To measure cell-to-cell variation in protein-mediated functions, we developed an approach to conduct ∼103 concurrent single-cell western blots (scWesterns) in ∼4 h. A microscope slide supporting a 30-μm-thick photoactive polyacrylamide gel enables western blotting: settling of single cells into microwells, lysis in situ, gel electrophoresis, photoinitiated blotting to immobilize proteins and antibody probing. We applied this scWestern method to monitor single-cell differentiation of rat neural stem cells and responses to mitogen stimulation. The scWestern quantified target proteins even with off-target antibody binding, multiplexed to 11 protein targets per single cell with detection thresholds of <30,000 molecules, and supported analyses of low starting cell numbers (∼200) when integrated with FACS. The scWestern overcomes limitations of antibody fidelity and sensitivity in other single-cell protein analysis methods and constitutes a versatile tool for the study of complex cell populations at single-cell resolution.

7 December 2015 in Annual Review of Biomedical Engineering
Verified
Journal Article
Closed access
MKMelissa Kotterman
Melissa Kotterman
TCThomas W. Chalberg
Thomas W. Chalberg
DSDavid Schaffer
David Schaffer
In a range of human trials, viral vectors have emerged as safe and effective delivery vehicles for clinical gene therapy, particularly for monogenic recessive disorders, but there has also been early work on some idiopathic diseases. These successes have been enabled by research and development efforts focusing on vectors that combine low genotoxicity and immunogenicity with highly efficient delivery, including vehicles based on adeno-associated virus and lentivirus, which are increasingly enabling clinical success. However, numerous delivery challenges must be overcome to extend this success to many diseases; these challenges include developing techniques to evade preexisting immunity, to ensure more efficient transduction of therapeutically relevant cell types, to target delivery, and to ensure genomic maintenance. Fortunately, vector-engineering efforts are demonstrating promise in the development of next-generation gene therapy vectors that can overcome these barriers. This review highlights key historical trends in clinical gene therapy, the recent clinical successes of viral-based gene therapy, and current research that may enable future clinical application.