Chengiodendron marginatum, an evergreen tree or shrub belonging to the Oleaceae family, represents a critical germplasm resource with considerable potential for novel cultivar breeding. To elucidate the adaptive responses of C. marginatum to climate change and provide strategic guidance for its conservation, this study investigates the changing patterns in its potential suitable habitats under various climate scenarios. We employed an integrated approach combining maximum entropy (Maxent) modeling with GIS spatial analysis, utilizing current occurrence records and paleoclimatic data spanning from the mid-Holocene to future projections (2041–2060 [2050s] and 2061–2080 [2070s]). Climate scenarios SSP126 and SSP585 were selected to represent contrasting emission pathways. The model demonstrated excellent predictive accuracy with an AUC value of 0.942, identifying precipitation-related variables (particularly the precipitation of driest month and annual precipitation) as the primary environmental factors shaping the geographical distribution of C. marginatum. Current suitable habitats encompass approximately 98.38 × 10⁴ km², primarily located in East, Central, and South China, with high-suitability habitats restricted to southern Hainan, Taiwan, and northeastern Guangxi. Since the mid-Holocene, an expansion of suitable habitats occurred despite localized contractions in Southwest China. Future projections revealed moderate habitat reduction under both scenarios, and high-suitability areas decreased substantially. Importantly, under both scenarios, persistent high-suitability habitats were maintained in southern Hainan, Taiwan, and northeastern Guangxi, which are identified as essential climate refugia for the species. These findings provide a basis for understanding the response of the species to climate change and offer valuable guidance for its conservation.