Seahorses are increasingly regarded as a promising farming object suitable for recirculating aquaculture systems (RASs) due to their high economic value. However, reports on the large-scale farming of seahorses in RASs are rare, and some key parameters, such as stocking densities, are still unclear. In the present study, we employed the lined seahorse (Hippocampus erectus), for which large-scale farming has been achieved, to determine the suitable stocking density for three different-sized juveniles in RASs. The three different-sized juveniles had body heights of 4.0, 7.0, and 9.0 cm, and their test density gradients were 1.0, 0.8, 0.6, and 0.4 inds/L; 0.6, 0.5, 0.4, and 0.3 inds/L; and 0.4, 0.3, 0.2, and 0.1 inds/L, respectively. The juveniles were cultivated for one month, and then their survival, growth, and plasma cortisol and brain serotonin contents (two stress-related indicators) were analyzed. The results show that, regardless of the size of the juveniles, a high density can inhibit growth and trigger stress responses. In addition, for small- (4.0 cm) and medium-sized (7.0 cm) juveniles, a high density can also exacerbate size heterogeneity and cause death. Taking into account the welfare and yield of farmed seahorses, the present study suggests that the suitable stocking densities for 4.0, 7.0, and 9.0 cm juveniles in RASs are 0.6, 0.4, and 0.2 inds/L, respectively.

Enteritis caused by Vibrio is a highly die-off disease that severely impeded substantial production in seahorse aquaculture. In the present study, challenged with LD50 of concentration of Vibrio harveyi, a total of 161 of susceptible and 166 of resistant individuals were allocated into binary survival phenotypes, thus, to firstly investigate the genetic architecture by genome-wide association study (GWAS) analysis, as well as to evaluate the feasibility of genomic selection (GS) in enteritis disease resistance trait of the lined seahorse Hippocampus erectus. Results indicated that the heritability for resistance to Vibrio harveyi was estimated to be 0.10. And a set of 10 significant/suggestive SNPs in a multiple chromosomes localization were identified, explaining 7.76% to 13.28% of genetic variance. Associated 82 of candidate genes were clustered into signal transduction, cell proliferation, response of external stress, bacteria defence, and anti-inflammatory processes. Moreover, the potential performance of genomic selection (GS) in application in selective breeding for enteritis disease resistance seahorses was assessed by genomic prediction (GP). In general, the predictive accuracy of the genomic estimated breeding value (GEBV) of BayesC exceeded the rrBLUP, BayesA, RKHS, and SVM models while with no significant difference. And the GWAS-informative SNPs was significantly superior in efficience than random selected markers by comparison of predictive performance on different selection strategies of SNPs. Overall, the genetic basis of enteritis disease resistance trait in the lined seahorse is a polygenic genetic architecture. SNPs associated with the important genes of cathepsin L1-like previously reported with respect to disease resistance are consider as potential molecular markers of genetic breeding. Furthermore, GS approach is an appropriate, effective, and less-cost application in breeding enteritis disease-resistant seahorses.

Seahorse (Hippocampus spp.) is popular in the markets of traditional Chinese medicine, aquarium, and curio. In order to protect wild stocks and still meet the market demand, China attempted the large-scale cultivation of seahorses in the early 21st century and achieved it in the 2010s. However, in recent years, two new issues have gradually emerged in Chinese seahorse cultivation. One is that the juveniles are prone to disease during diet conversion, and the other is that the reproductive performance of broodstocks is significantly reduced. With the aim to provide some measures that can alleviate these issues, in the present study, we used lined seahorse (Hippocampus erectus, a species widely cultured in China) as the experimental subject and Astragalus polysaccharides (APSs) as the immunostimulant to test whether APSs could improve the immune-health status and reproductive performance of seahorses. The measured indices for reproductive performance included ovarian lipid content, assessment time required before mating for paired male and female seahorses, mating success rate, brood size, and newborn body height. The results showed that for juveniles during diet conversion, their body weight, survival rate, plasma immunocytokine contents (interleukin-2, interferon-α, and immunoglobulin M), and alpha diversity indices (Simpson and Pielou’s-e) of the intestinal microbiota were significantly higher than those of the control group after dietary APSs. For broodstocks, compared with the control group, the expression of lipid substances in the ovary was significantly upregulated, the assessment time was significantly shortened, and the body height of their newborns was significantly increased in the APS group. These results demonstrate that APSs could indeed improve the immune-health status and reproductive performance of seahorses, providing guidance for addressing existing issues in seahorse cultivation.

Frozen mysid shrimp is the core feed for commercial seahorse aquaculture, yet quality deterioration caused by long-term cold storage severely constrains the survival and reproductive performance of seahorses. By integrating targeted metabolomics, physicochemical spoilage indicators, and 16S rRNA high-throughput sequencing, this study multidimensionally analyzed the stage-specific mechanisms of nutritional degradation and microecological deterioration of mysid feed at −20 °C under fresh (0 months), short-term frozen (2 months), and long-term frozen (10 months) conditions. The results demonstrate that short-term storage (2 months) effectively suppresses microbial-induced spoilage of mysids; however, freeze–thaw stress triggers cellular lysis, leading to a significant depletion of key water-soluble feeding-attractant amino acids, notably glycine and aspartate. In contrast, long-term frozen storage (10 months) induces severe lipid peroxidation and a massive accumulation of total volatile basic nitrogen (TVB-N). Microbiome analysis confirmed that the fundamental trigger for feed deterioration during the late storage stage is the explosive community succession of psychrotrophic specific spoilage organisms (SSOs), with Shewanella, Photobacterium, and Pseudoalteromonas emerging as the absolute dominant taxa. The highly active extracellular lipases and proteases secreted by these microbial communities extensively degrade the structural lipids of the feed, ultimately resulting in a paradoxical rebound in free fatty acid content during long-term storage. In summary, our research comprehensively details how freezing compromises diet quality through specific biological and chemical pathways. This establishes essential scientific groundwork aimed at refining commercial preservation techniques, executing precise dietary enrichments, and ultimately securing long-term viability across the captive Hippocampus breeding sector.

The gut microbiome of rainbow trout (Oncorhynchus mykiss) and Atlantic salmon (Salmo salar) is increasingly recognized as a functional interface linking dietary inputs, epithelial barrier integrity, mucosal immunity, environmental stress, disease susceptibility, and antimicrobial-resistance risk in intensive aquaculture. Based on available salmonid studies and relevant evidence from broader fish and aquaculture systems, this review synthesizes current knowledge on salmonid gut microbial composition, nutritional modulation, microbiome–mucosal immune interactions, aquaculture stressors, antibiotic exposure, antibiotic resistance genes (ARGs), mobile genetic elements (MGEs), metagenomics, multi-omics, and emerging microbiome-informed decision-support tools. Current evidence does not support a universally stable single-core microbiota in these species. Instead, community structure is shaped by developmental stage, freshwater–seawater transition, intestinal segment, digesta versus mucosa sampling, diet, temperature, stress, health status, and methodological workflow. Feed substitution and functional additives can remodel the gut microbiota, but these shifts should be interpreted alongside histology, barrier function, metabolic profiles, immune indicators, and disease-resistance phenotypes. Antibiotic exposure may reduce acute bacterial disease pressure while disturbing community structure and potentially enriching ARGs or ARG–MGE associations. Risk assessment should therefore move beyond ARG abundance toward host–ARG–MGE linkage using shotgun metagenomics, metagenome-assembled genomes, long-read sequencing, Hi-C, and externally validated multi-omics models. Machine learning and artificial intelligence approaches may support feature screening, risk stratification, and decision support, but their application in salmonid gut-health management remains at an early stage and requires external validation across sites, production stages, diets, and seasons.

This study evaluated the endpoint biochemical responses and associated physiological status of rainbow trout (Oncorhynchus mykiss) of different body sizes during salinity acclimation under varying temperature and salinity conditions. An L₉ (3⁴) orthogonal design was applied using three nominal body-size levels (100, 250, and 500 g), three temperatures (10, 15, and 20 °C), and three salinities (10, 20, and 30‰) over 60 days. Hepatic superoxide dismutase (SOD), alkaline phosphatase (ALP), and acid phosphatase (ACP) activities and plasma malondialdehyde (MDA), urea nitrogen (BUN), ammonia, alanine aminotransferase (ALT), and aspartate aminotransferase (AST) were measured. For inferential analysis, the three fish sampled from each tank were averaged to obtain one tank-level value, yielding 18 tank-level observations. Tank-level main-effects analysis showed that body size was significantly associated with ALP, ACP, MDA, BUN, ammonia, ALT, and AST. Temperature was significantly associated with SOD, ACP, MDA, BUN, and AST, whereas salinity was significantly associated with MDA, ALT, and AST. MDA and AST were the only endpoints associated with all three factors. The biochemical responses were pathway-specific rather than uniformly directional across treatment combinations. Because interactions could not be independently estimated in the L₉ design, the identified main effects should be interpreted as orthogonal screening associations. Overall, body-size class was associated with the broadest range of endpoints and should be incorporated into future experimental assessments of rainbow trout within the tested salinity range of 10–30‰.