Pratima Adhikari

Dr. Pratima Adhikari

orcid

Research Focus & Metrics

Academic Career Length

7Years (2020-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

View All Publications
26 October 2023 in Pathogens
Verified
Journal Article
Open access
PDF file
JJJiddu Joseph
Jiddu Joseph
LZLi Zhang
Li Zhang
PAPratima Adhikari
Pratima Adhikari
JEJeff D. Evans
Jeff D. Evans
RRReshma Ramachandran
Reshma Ramachandran
Poultry meat is one of the major animal protein sources necessary to meet the global protein demand. Sustainability in broiler production is the key to achieving its continuous supply, and broiler breeders play a critical role in maintaining this sustainability by providing good quality chicks. Colibacillosis, the disease caused by avian pathogenic Escherichia coli (APEC), causes severe economic losses to the poultry industry globally. Moreover, APEC causes an additional burden among broiler breeders, such as a decrease in egg production and mortality among these birds. There is vertical transmission of APEC to the broiler chicks through eggs, resulting in increased first-week mortality and subsequent horizontal transmission at the hatchery. In this regard, the vertical transmission of antibiotic resistance genes is another concern that needs attention. Controlling several diseases in broiler breeders would possibly reduce the first-week mortality in chicks, thereby maintaining the production level. For that, constant monitoring of the bacterial populations is critical. Moreover, amidst the increased antibiotic resistance pattern, more focus on alternative treatment strategies like vaccines, probiotics, and bacteriophages is necessary. Future research focusing on strategies to mitigate APEC in broiler breeders would be one of the finest solutions for sustainable broiler production.

8 February 2023 in Journal of Applied Microbiology
Verified
Journal Article
Open access
PDF file
FOFozol Ovi
Fozol Ovi
LZLi Zhang
Li Zhang
HNHaley Nabors
Haley Nabors
LJLinan Jia
Linan Jia
PAPratima Adhikari
Pratima Adhikari
Escherichia coli (E. coli) survive in various hosts and environments due to their highly diversified genome. These bacteria have co-evolved with human, colonized a broad range of hosts and survive as a commensal organism or pathogen. E. coli that adopted a pathogenic lifecycle in avian hosts typically belong to phylogroups B2 and D. Phylogenic investigations discovered these E. coli are noticeably overlapped with the phylogroup of E. coli infecting humans. This overlapping is possibly due to a parallel evolution in both hosts from a common ancestor, which indicates a high zoonotic potential of avian pathogenic E. coli (APEC). However, some contrasting evidence of other phylogroups infecting the avian host has also been reported in recent studies indicating phylogroups of E. coli are not definitive, only suggestive to their virulence in chickens. Furthermore, virulence-associated genes that contribute to bacterial features necessary to establish APEC infection, are predominantly located in plasmids. Therefore, phylogenetic classification based on chromosomal markers is often inadequate to identify APEC. Moreover, E. coli can obtain virulent plasmids from other bacteria which further complicates the link between phylogenetic classification and pathotype. Previous research has reported an array of virulence-associated genes highly prevalent only in APEC isolates. Function of these genes are possibly a prerequisite to establishing APEC infections in chickens. Consequently, these genes can be used to distinguish APEC from environmental, commensal, intestinal and other extra-intestinal E. coli. Therefore, we have extensively reviewed previous literature to compile the virulence-associated genes that are highly prevalent in APEC compared to other E. coli. From this review, we have identified 10 key virulence-associated genes (iss, tsh, iroN, episomal/chromosomal ompT, iutA, cvaC, hlyF, iucD, papG allel (II/III) and papC) that are frequently reported in APEC isolates than non-pathogenic E. coli. A compilation of these research findings can be crucial to the molecular identification of APEC. Furthermore, it can serve as a guideline for future investigation and aid in formulation of intervention strategies.

12 November 2021 in Poultry Science
Verified
Journal Article
Open access
MSMilan K. Sharma
Milan K. Sharma
CMChristopher D. McDaniel
Christopher D. McDaniel
AKAaron S. Kiess
Aaron S. Kiess
RLRobert E. Loar
Robert E. Loar
PAPratima Adhikari
Pratima Adhikari
This study was conducted to determine the effect of housing environment and laying hen strain on performance, egg quality, and microbiology of the cloaca and eggshell. A total of 1,152 Hy-Line Brown (HB) and Hy-Line W-36 White Leghorn (W-36) hens were used. All hens were kept in conventional cages (CC) from 18 to 32 wk of age and then moved to either enriched colony cages (EC) or free-range (FR) pens or continued in CC. Hens were randomly allocated into a 2 × 3 factorial arrangement of 2 laying hen strains (brown and white) and 3 housing environments (CC, EC, and FR) in a split plot in time (hen age) design. The experiment was conducted from 32 to 85 wk of age. The experiment was divided into 2 phases: early phase (32–51 wk of age) and late phase (52–85 wk of age). A 3-way interaction was observed for hen day egg production (HDEP) among housing environments, hen strain, and bird age in the early phase (P = 0.004) as well as in the late phase (P < 0.0001). In both of the phases, HDEP was higher in CC and FR than in EC. Hy-Line W-36 hens raised in EC had the lowest HDEP compared to other treatments. A 3-way interaction was observed for feed intake (FI; P = 0.017) and feed conversion ratio (FCR) in the late phase (P < 0.0001). The lowest FI and highest FCR were observed in EC for W-36 hens. Free-range hens performed in-between for eggshell quality when compared to CC and EC while HB had better egg quality than W-36. Free-range hens had higher cloacal bacterial counts for aerobes, anaerobes, and coliforms than CC and EC. Higher eggshell bacterial contamination was observed in eggs from FR versus eggs from CC and EC. These results indicate that both housing environment and laying hen strain affect performance and egg quality as well as cloacal and eggshell microbiology. Further studies should be conducted to determine food safety and economic impacts when using different hen strains and housing environments.

31 December 2022 in Poultry Science
Verified
Journal Article
Open access
IPI. Poudel
I. Poudel
VHV.R. Hodge
V.R. Hodge
KWK.G.S. Wamsley
K.G.S. Wamsley
KRK.D. Roberson
K.D. Roberson
PAPratima Adhikari
Pratima Adhikari
An experiment was conducted to evaluate the effects of protease supplementation and reduced digestible amino acid (dAA)/ crude protein (CP) level on productive performance, AA digestibility, and egg quality parameters in Hy-Line W-36 laying hen from 30 to 50 wk of age. A total of 768 hens (12 replicates of 8 hens per treatment) were equally and randomly allocated into 8 experimental diets in a 4 × 2 factorial arrangement of dAA/CP level (100, 95, 90, and 85% of breeder recommendation) and protease (exclusion or inclusion). Protease was added at 60 g/metric ton of feed in the inclusion group. Hens were housed in raised-wire cages with a stocking density of 870 cm2/bird. The adequate (100%) diet was based on corn and soybean meal and formulated based on the digestible (d) Lys and dAAs (dMet, dThr, dTrp, dTSAA, dIle, and dVal) to meet 100% of the current management guide recommendation. Variations in dAA/CP (95, 90, and 85% diets) were accomplished by reducing the 100% dAA by 5, 10, and 15%, respectively. All diets were supplemented with phytase at 500 phytase units (FTU)/kg. Data were analyzed using PROC GLM of SAS 9.4. There was a main effect of dAA/CP level on 85% diet where it had a lower mean hen-day egg production (HDEP, P < 0.01), egg mass (EM, P < 0.01), and higher feed conversion ratio (FCR, P < 0.001). Higher egg weight (P < 0.01) was observed in 95 and 100% dAA/CP level diets. However, Haugh unit (P < 0.01) and albumen height (P < 0.01) were higher in 85 and 90% diets. The inclusion of protease reduced the feed consumption (P = 0.0247), FCR for dozens of eggs (P = 0.0049) from 30 to 49 wk of age without affecting the HDEP or EM. Protease supplementation and dAA/CP level had an effect on the apparent ileal digestibility (AID) of CP (P = 0.019), Lys (P < 0.01), Thr (P < 0.01), Trp (P = 0.017), and Val (P < 0.01). Addition of protease significantly increased egg income (P = 0.033) and return on investment (P = 0.00223) from 30 to 37 wk of age. At 38 to 50 wk of age, dAA/CP level had a significant effect on egg income (P < 0.001), feed cost (P < 0.001), and return on investment (P < 0.001). This experiment indicates that the inclusion of protease in 90 and 95% lower dAA/CP diets could help improve the digestibility of CP, and key amino acids and maintain productive performance of corn and soybean meal-based diets in Hy-Line W-36 laying hen from 30 to 50 wk of age.

27 January 2023 in Poultry
Verified
Journal Article
Open access
PDF file
JJJiddu Joseph
Jiddu Joseph
MJMadalyn Jennings
Madalyn Jennings
NBNicolle Lima Barbieri
Nicolle Lima Barbieri
LZLi Zhang
Li Zhang
PAPratima Adhikari
Pratima Adhikari
RRReshma Ramachandran
Reshma Ramachandran
Avian pathogenic Escherichia coli (APEC) causes colibacillosis in poultry, a leading cause of poultry mortality worldwide. It is crucial to control APEC in broiler breeders as it is vertically transferred to progeny via eggs. However, there is only limited knowledge on the current APEC population in breeders. This study characterized 28 APEC strains isolated from broiler breeders with colibacillosis. The genotypic-virulence characteristics as well as antimicrobial and heavy-metal resistance patterns of the isolates were determined. Results showed that O88 is the most prevalent serogroup and B2 is the predominant phylogenetic group. Among virulence genes, genes for iron acquisition (iroN and iutA), protectins (iss and ompT), and toxin production (hlyF) exhibited the highest prevalence. Further, 93% of the isolates carried at least one antimicrobial resistance gene with highest prevalence for tetracycline gene tetA. Among the isolates, 10.71% exhibited multidrug resistance. All isolates carried at least one heavy-metal resistance gene with the highest prevalence for arsenic gene arsC and the highest resistance towards silver. Our findings provide insight into the characteristics of current APEC populations in broiler breeders in Mississippi. This will help future research on the pathogenesis of APEC and the development of effective prevention and control strategies against APEC in broiler breeders.

1 March 2021 in Poultry Science
Verified
Journal Article
Open access
MSMilan K. Sharma
Milan K. Sharma
DWDima White
Dima White
Chongxiao ChenChongxiao Chen
Chongxiao Chen
WKWoo Kyun Kim
Woo Kyun Kim
PAPratima Adhikari
Pratima Adhikari
This study aimed to determine the effect of the housing environment and laying hen strain on tibia and femur properties. A 3 × 2 factorial arrangement of 3 housing environments (conventional cages [CC], enriched colony cages [EC], and free range [FR]) and 2 laying hen strains (Hy-Line W-36 [W-36] and Hy-Line Brown [HB]) in a completely randomized design was conducted from 32 to 85 wk of age. Six left tibias were collected at 8 different time points (38, 45, 52, 59, 65, 72, 79, and 85 wk of age), whereas 6 left femurs were collected at 3 time points (38, 65, and 85 wk of age). Tibias were evaluated for tibia breaking strength (TBS) and ash percentage, whereas femurs were evaluated for bone mineral density (BMD), bone mineral content, bone volume as a fraction tissue volume, and porosity percentage from total, cortical, medullary, and trabecular bones. The higher TBS (P = 0.0005) and ash percentage (P = 0.045) was observed in hens raised in FR systems compared with those raised in the CC. Overall, TBS of W-36 hens was significantly greater than that of HB hens (P < 0.0001); however, there was no difference in the ash percentage between the strains (P > 0.05). An interaction between the housing environment and hen strain was observed for BMD (P = 0.04), wherein W-36 hens raised in the FR system had higher BMD than HB hens. Similarly, hens raised in FR systems had higher trabecular bone volume than those raised in CC (P = 0.022). Hen strain influenced total and cortical bone properties: BMD, bone volume as a fraction tissue volume, and porosity percentage, wherein W-36 hens had better properties than HB hens (P < 0.05). Trabecular BMD was higher in W-36 hens than in HB hens (P = 0.04), whereas bone volume was higher in HB hens (P < 0.0001). The results suggest that raising laying hens in alternative housing systems that have provision for exercise such as FR reduces structural bone loss, stimulate structural bone formation, and improve breaking strength of bones; however, it varies with the strain.