This study describes two viral communities from the world’s oldest lake, Lake Baikal. For the analysis, we chose under-ice and late spring periods of the year as the most productive for Lake Baikal. These periods show the maximum seasonal biomass of phytoplankton and bacterioplankton, which are targets for viruses, including bacteriophages. At that time, the main group of viruses were tailed bacteriophages of the order Caudovirales that belong to the families Myoviridae, Siphoviridae and Podoviridae. Annotation of functional genes revealed that during the under-ice period, the “Phages, Prophages, Transposable Elements and Plasmids” (27.4%) category represented the bulk of the virome. In the late spring period, it comprised 9.6% of the virome. We assembled contigs by two methods: Separately assembled in each virome or cross-assembled. A comparative analysis of the Baikal viromes with other aquatic environments indicated a distribution pattern by soil, marine and freshwater groups. Viromes of lakes Baikal, Michigan, Erie and Ontario form the joint World’s Largest Lakes clade.

Microcystis, a potentially toxigenic cyanobacterium known to form extensive blooms in eutrophic lakes globally, was investigated in the cold oligotrophic Lake Baikal. We report the isolation of two Microcystis strains, Microcystis aeruginosa and M. novacekii, and document the presence of the latter species in Lake Baikal for the first time. In M. aeruginosa strain BN23, we detected the microcystin synthetase gene mcyE. Liquid chromatography-mass spectrometry revealed the presence of two microcystin variants in BN23, with microcystin-LR, a highly potent toxin, being the dominant form. The concentration of MC-LR reached 540 µg/g dry weight. In contrast, M. novacekii strain BT23 lacked both microcystin synthesis genes and detectable toxins. The habitat waters were characterized as oligotrophic with minor elements of mesotrophy, exhibiting low phytoplankton biomass dominated by the chrysophyte Dinobryon cylindricum (76–77% of biomass), with cyanobacteria contributing 8–10%. The contribution of Microcystis spp. to the total phytoplankton biomass could not be quantified as they were exclusively found in net samples. The water temperature at both sampling stations was ~19 °C, which is considerably lower than optimal for Microcystis spp. and potentially conducive to enhanced microcystin production in toxigenic genotypes.

This article presents the 2023 data on the snow cover in the northern basin of Lake Baikal. We estimated the spatial distribution of the main chemical elements in the snow cover. The high relative concentration of nitrates and hydrogen ions was a characteristic of the ionic composition of snowmelt water in comparison with the industrial areas of the Baikal region. We calculated the accumulation of major ions and biogenic elements in the snow cover. A comparative analysis of the obtained experimental data with regional background values and results of the similar previous studies revealed a trend towards a decrease in mineralization and an increase in the acidity of snow melt waters over the past 11 years. Low values of the total amount of ions and pH in the snow cover of some areas of the northern basin of Lake Baikal allowed us to classify them as a background for the entire Baikal region.