Deepa Seetharam

Dr. Deepa Seetharam


Research Focus & Metrics

Academic Career Length

6Years (2021-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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3 July 2023 in Journal of Clinical Investigation
Verified
Journal Article
Open access
PDF file
Ashish H. ShahAshish H. Shah
Ashish H. Shah
SRSarah Renae Rivas
Sarah Renae Rivas
TDTara T. Doucet-O'Hare
Tara T. Doucet-O'Hare
VGVaidya Govindarajan
Vaidya Govindarajan
CDCatherine DeMarino
Catherine DeMarino
ANAvindra Nath
Avindra Nath
Human endogenous retroviruses (HERVs) are ancestral viral relics that constitute nearly 8% of the human genome. Although normally silenced, the most recently integrated provirus HERV-K (HML-2) can be reactivated in certain cancers. Here, we report pathological expression of HML-2 in malignant gliomas in both cerebrospinal fluid and tumor tissue that was associated with a cancer stem cell phenotype and poor outcomes. Using single-cell RNA-Seq, we identified glioblastoma cellular populations with elevated HML-2 transcripts in neural progenitor–like cells (NPC-like) that drive cellular plasticity. Using CRISPR interference, we demonstrate that HML-2 critically maintained glioblastoma stemness and tumorigenesis in both glioblastoma neurospheres and intracranial orthotopic murine models. Additionally, we demonstrate that HML-2 critically regulated embryonic stem cell programs in NPC-derived astroglia and altered their 3D cellular morphology by activating the nuclear transcription factor OCT4, which binds to an HML-2–specific long-terminal repeat (LTR5Hs). Moreover, we discovered that some glioblastoma cells formed immature retroviral virions, and inhibiting HML-2 expression with antiretroviral drugs reduced reverse transcriptase activity in the extracellular compartment, tumor viability, and pluripotency. Our results suggest that HML-2 fundamentally contributes to the glioblastoma stem cell niche. Because persistence of glioblastoma stem cells is considered responsible for treatment resistance and recurrence, HML-2 may serve as a unique therapeutic target.

31 January 2022 in International Journal Of Impotence Research
Verified
Journal Article
Closed access
PDF file
KKKajal Khodamoradi
Kajal Khodamoradi
ZKZahra Khosravizadeh
Zahra Khosravizadeh
DSDeepa Seetharam
Deepa Seetharam
SMSuresh Mallepalli
Suresh Mallepalli
NFNatoli Farber
Natoli Farber
Himanshu AroraHimanshu Arora
Himanshu Arora

12 September 2022 in Viruses
Verified
Journal Article
Open access
PDF file
SRSarah Renae Rivas
Sarah Renae Rivas
MVMynor Mendez Valdez
Mynor Mendez Valdez
VGVaidya Govindarajan
Vaidya Govindarajan
DSDeepa Seetharam
Deepa Seetharam
TDTara T. Doucet-O'Hare
Tara T. Doucet-O'Hare
Ashish H. ShahAshish H. Shah
Ashish H. Shah
Human endogenous retrovirus-K (HERV-K) is the most recently integrated retrovirus in the human genome, with implications for multiple disorders, including cancer. Although typically transcriptionally silenced in normal adult cells, dysregulation of HERV-K (HML-2) elements has been observed in cancer, including breast, germ cell tumors, pancreatic, melanoma, and brain cancer. While multiple methods of carcinogenesis have been proposed, here we discuss the role of HERV-K (HML-2) in the promotion and maintenance of the stem-cell in cancer. Aberrant expression of HERV-K has been shown to promote expression of stem cell markers and promote dedifferentiation. In this review, we discuss HERV-K (HML-2) as a potential therapeutic target based on evidence that some tumors depend on the expression of its proteins for survival.

19 June 2023 in Microbial Pathogenesis
Verified
Journal Article
Closed access
MVMynor Mendez Valdez
Mynor Mendez Valdez
EKEnoch Kim
Enoch Kim
SBShovan Bhatia
Shovan Bhatia
ASAli G. Saad
Ali G. Saad
CSCharif Sidani
Charif Sidani
Ashish H. ShahAshish H. Shah
Ashish H. Shah

20 May 2024 in Cancers
Verified
Journal Article
Open access
PDF file
JDJelisah F. Desgraves
Jelisah F. Desgraves
MVMynor Mendez Valdez
Mynor Mendez Valdez
JCJay Chandar
Jay Chandar
MGMuhammet Enes Gurses
Muhammet Enes Gurses
LHLisa Henderson
Lisa Henderson
Ashish H. ShahAshish H. Shah
Ashish H. Shah
Purpose: The limited efficacy of current treatments for malignant brain tumors necessitates novel therapeutic strategies. This study aimed to assess the potential of antisense oligonucleotides (ASOs) as adjuvant therapy for high-grade gliomas, focusing on their CNS penetration and clinical translation prospects. Methods: A comprehensive review of the existing literature was conducted to evaluate the implications of ASOs in neuro-oncology. Studies that investigated ASO therapy’s efficacy, CNS penetration, and safety profile were analyzed to assess its potential as a therapeutic intervention for high-grade gliomas. Results: ASOs present a promising avenue for enhancing targeted gene therapies in malignant gliomas. Their potent CNS penetration, in vivo durability, and efficient transduction offer advantages over conventional treatments. Preliminary in vivo and in vitro studies suggest ASOs as a viable adjuvant therapy for high-grade gliomas, warranting further exploration in clinical trials. Conclusions: ASOs hold significant promise as adjuvant therapy for high-grade gliomas, offering improved CNS penetration and durability compared with existing treatments. While preliminary studies are encouraging, additional research is needed to establish the safety and efficacy of ASO therapy in clinical settings. Further investigation and clinical trials are warranted to validate ASOs as a transformative approach in neuro-oncology.

17 March 2025 in Journal of Clinical Investigation
Verified
Journal Article
Open access
PDF file
DSDeepa Seetharam
Deepa Seetharam
JCJay Chandar
Jay Chandar
CRChristian Ramsoomair
Christian Ramsoomair
JDJelisah F. Desgraves
Jelisah F. Desgraves
AMAlexandra Alvarado Medina
Alexandra Alvarado Medina
Ashish H. ShahAshish H. Shah
Ashish H. Shah
Viral mimicry refers to the activation of innate antiviral immune responses due to the induction of endogenous retroelements (REs). Viral mimicry augments antitumor immune responses and sensitizes solid tumors to immunotherapy. Here, we found that targeting what we believe to be a novel, master epigenetic regulator, Zinc Finger Protein 638 (ZNF638), induces viral mimicry in glioblastoma (GBM) preclinical models and potentiates immune checkpoint inhibition (ICI). ZNF638 recruits the HUSH complex, which precipitates repressive H3K9me3 marks on endogenous REs. In GBM, ZNF638 is associated with marked locoregional immunosuppressive transcriptional signatures, reduced endogenous RE expression, and poor immune cell infiltration. Targeting ZNF638 decreased H3K9 trimethylation, increased REs, and activated intracellular dsRNA signaling cascades. Furthermore, ZNF638 knockdown upregulated antiviral immune programs and significantly increased PD-L1 immune checkpoint expression in diverse GBM models. Importantly, targeting ZNF638 sensitized mice to ICI in syngeneic murine orthotopic models through innate IFN signaling. This response was recapitulated in recurrent GBM (rGBM) samples with radiographic responses to checkpoint inhibition with widely increased expression of dsRNA, PD-L1, and perivascular CD8 cell infiltration, suggesting that dsRNA signaling may mediate response to immunotherapy. Finally, low ZNF638 expression was a biomarker of clinical response to ICI and improved survival in patients with rGBM and patients with melanoma. Our findings suggest that ZNF638 could serve as a target to potentiate immunotherapy in gliomas.