As an important marginal sea in the western Pacific, sea-level changes in the South China Sea not only respond to global warming but are also regulated by regional ocean dynamics and climate modes, exerting profound impacts on the socioeconomic development and engineering safety of coastal regions. To address the widespread issues of low accuracy and robustness in existing sea-level prediction models when handling nonlinear, multi-scale sequences, as well as the complexity of sea-level change mechanisms in the South China Sea, this study constructs a hybrid model combining Singular Spectrum Analysis and Long Short-Term Memory neural networks (SSA-LSTM). The coral skeletal oxygen isotope ratio (δ¹⁸O) used in this study is a key indicator for characterizing the marine environment, defined as the per mille difference in the ¹⁸O/¹⁶O ratio of a sample relative to a standard. Based on coral δ¹⁸O data from the South China Sea, the sea level from 1850 to 2015 is reconstructed. SSA is then applied to decompose the sea-level data into trend and periodic components. The trend component, accounting for 37.03%, and components 2 to 11, containing major periodic information, are extracted to reconstruct the sea-level series. The reconstructed series retains 95.89% of the original information. The trend component is modeled through curve fitting, while the periodic components are modeled using an LSTM neural network. Optimal hyperparameters for the LSTM are determined through parameter sensitivity analysis. An integrated SSA-LSTM model is constructed to predict sea level in the South China Sea, and its predictions are compared with those from a Singular Spectrum Analysis-Autoregressive Integrated Moving Average (SSA-ARIMA) model. The results indicate that from 1850 to 2015, sea level in the South China Sea exhibits periodic fluctuations with a significant overall upward trend. Specifically, the growth rate from 1921 to 1940 reaches 5.49 mm/yr. Predictions from the SSA-LSTM model are significantly higher than those from the SSA-ARIMA model. The SSA-LSTM model projects that from 2016 to 2035, sea level in the South China Sea will continue to rise at a fluctuating rate of 0.75 mm/yr, with a cumulative rise of approximately 15 mm. This study provides a novel methodology for investigating the mechanisms of sea-level change in the South China Sea and offers a scientific basis for coastal risk management.