Mohammad Vakili

Dr. Mohammad Vakili

orcid

Research Focus & Metrics

Academic Career Length

11Years (2016-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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9 September 2021 in IUCrJ
Verified
Journal Article
Open access
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SPSuraj Pandey
Suraj Pandey
GCGeorge Calvey
George Calvey
AKAndrea M. Katz
Andrea M. Katz
Tek Narsingh MallaTek Narsingh Malla
Tek Narsingh Malla
FKFaisal Koua
Faisal Koua
MSMarius Schmidt
Marius Schmidt
Here, we illustrate what happens inside the catalytic cleft of an enzyme when substrate or ligand binds on single-millisecond timescales. The initial phase of the enzymatic cycle is observed with near-atomic resolution using the most advanced X-ray source currently available: the European XFEL (EuXFEL). The high repetition rate of the EuXFEL combined with our mix-and-inject technology enables the initial phase of ceftriaxone binding to the Mycobacterium tuberculosis β-lactamase to be followed using time-resolved crystallography in real time. It is shown how a diffusion coefficient in enzyme crystals can be derived directly from the X-ray data, enabling the determination of ligand and enzyme–ligand concentrations at any position in the crystal volume as a function of time. In addition, the structure of the irreversible inhibitor sulbactam bound to the enzyme at a 66 ms time delay after mixing is described. This demonstrates that the EuXFEL can be used as an important tool for biomedically relevant research.

15 February 2022 in Journal of Synchrotron Radiation
Verified
Journal Article
Open access
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MVMohammad Vakili
Mohammad Vakili
JBJohan Bielecki
Johan Bielecki
JKJuraj Knoška
Juraj Knoška
FOFlorian Otte
Florian Otte
HHHuijong Han
Huijong Han
JSJoachim Schulz
Joachim Schulz
The Sample Environment and Characterization (SEC) group of the European X-ray Free-Electron Laser (EuXFEL) develops sample delivery systems for the various scientific instruments, including systems for the injection of liquid samples that enable serial femtosecond X-ray crystallography (SFX) and single-particle imaging (SPI) experiments, among others. For rapid prototyping of various device types and materials, sub-micrometre precision 3D printers are used to address the specific experimental conditions of SFX and SPI by providing a large number of devices with reliable performance. This work presents the current pool of 3D printed liquid sample delivery devices, based on the two-photon polymerization (2PP) technique. These devices encompass gas dynamic virtual nozzles (GDVNs), mixing-GDVNs, high-viscosity extruders (HVEs) and electrospray conical capillary tips (CCTs) with highly reproducible geometric features that are suitable for time-resolved SFX and SPI experiments at XFEL facilities. Liquid sample injection setups and infrastructure on the Single Particles, Clusters, and Biomolecules and Serial Femtosecond Crystallography (SPB/SFX) instrument are described, this being the instrument which is designated for biological structure determination at the EuXFEL.

4 October 2019 in Scientific Reports
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Journal Article
Open access
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RVRamakrishna Vasireddi
Ramakrishna Vasireddi
JKJoscha Kruse
Joscha Kruse
MVMohammad Vakili
Mohammad Vakili
SKSatishkumar Kulkarni
Satishkumar Kulkarni
TKThomas Florian Keller
Thomas Florian Keller
MTMartin Trebbin
Martin Trebbin
Uniform endless fibers are ubiquitous and their applications range from functional textiles over biomedical engineering to high-performance filtering and drug delivery systems. Here, we report a new method for the direct, reproducible fabrication of uniform polymer and composite micro-/nanofibers using a microfluidic gas flow focusing nozzle (Gas Dynamic Virtual Nozzle (GDVN)) relinquishing the need for external fiber pulling mechanisms. Compared to other methods, this technique is inexpensive, user-friendly and permits precise fiber diameter control (~250 nm to ~15 µm), high production rate (m/s-range) and direct fiber deposition without clogging due to stable, gas-focused jetting. Control over shape (flat or round) and surface patterning are achieved by simply tuning the air pressure and polymer concentration. The main thinning process happens after the polymer exits the device and is, therefore, mostly independent of the nozzle’s internal geometry. Nevertheless, the lithography-based device design is versatile, allowing for precise flow-field control for operation stability as well as particle alignment control. As an example, we demonstrate the successful production of endless hematite nanocomposite fibers which highlights this technology’s exciting possibilities that can lead to the fabrication of multifunctional/stimuli-responsive fibers with thermal and electrical conductivity, magnetic properties and enhanced mechanical stability.

13 February 2019 in Journal of Synchrotron Radiation
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Journal Article
Closed access
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DMDiana C. F. Monteiro
Diana C. F. Monteiro
MVMohammad Vakili
Mohammad Vakili
JHJessica Harich
Jessica Harich
MSMichael Sztucki
Michael Sztucki
SMSusanne M. Meier
Susanne M. Meier
MTMartin Trebbin
Martin Trebbin

31 July 2023 in Journal of the American Chemical Society
Verified
Journal Article
Closed access
MAMariya Aleksich
Mariya Aleksich
DPDaniel W. Paley
Daniel W. Paley
ESElyse A. Schriber
Elyse A. Schriber
WLWill Linthicum
Will Linthicum
VOVanessa Oklejas
Vanessa Oklejas
JHJ. Nathan Hohman
J. Nathan Hohman

16 May 2019 in ACS Nano
Verified
Journal Article
Closed access
SMStefan Merkens
Stefan Merkens
MVMohammad Vakili
Mohammad Vakili
ASAna Sánchez-Iglesias
Ana Sánchez-Iglesias
Lucio LittiLucio Litti
Lucio Litti
YGYunyun Gao
Yunyun Gao
MTMartin Trebbin
Martin Trebbin