Motivation: The BioTIME database contains raw data on species identities and abundances in ecological assemblages through time. These data enable users to calculate temporal trends in biodiversity within and amongst assemblages using a broad range of metrics. BioTIME is being developed as a community‐led open‐source database of biodiversity time series. Our goal is to accelerate and facilitate quantitative analysis of temporal patterns of biodiversity in the Anthropocene.Main types of variables included: The database contains 8,777,413 species abundance records, from assemblages consistently sampled for a minimum of 2 years, which need not necessarily be consecutive. In addition, the database contains metadata relating to sampling methodology and contextual information about each record.Spatial location and grain: BioTIME is a global database of 547,161 unique sampling locations spanning the marine, freshwater and terrestrial realms. Grain size varies across datasets from 0.0000000158 km²(158 cm²) to 100 km²(1,000,000,000,000 cm²).Time period and grain: BioTIME records span from 1874 to 2016. The minimal temporal grain across all datasets in BioTIME is a year.Major taxa and level of measurement: BioTIME includes data from 44,440 species across the plant and animal kingdoms, ranging from plants, plankton and terrestrial invertebrates to small and large vertebrates.Software format: .csv and .SQL.

We investigated the pathways of N2 production in the oxygen-deficient water column of the eastern tropical South Pacific off Iquique, Chile, at 20°S, through short anoxic incubations with 15N-labelle...

We present an analysis of seasonal variations in the trophic pathways of carbon in a highly productive coastal upwelling region in the Humboldt current system off Chile. Seasonal changes in phytoplankton, protozooplankton, and bacteria biomass, along with rates of primary production (PP), bacterial growth, secondary production, vertical particle fluxes, and feeding by protozooplankton, omnivorous mesozooplankton, and carnivorous gelatinous zooplankton were determined from July 2004 to June 2005. Phytoplankton biomass and PP were maximal during spring/summer months, associated with upwelling episodes. Heterotrophic nanoflagellates (HNF) were the principal consumers of bacteria, removing >100% of their biomass daily. During autumn/winter, the protozooplankton grazed down a large fraction of HNF production (56% to 96% d⁻¹). The mesozooplankton consumed 1–6% of the PP d⁻¹; the different size fractions of copepods were omnivorous mostly during autumn/winter months, and ctenophores preyed most strongly on small copepods (0.5% to 5% d⁻¹). A large part of the PP was channeled through the microbial food web, and only a small part directly to copepods via the herbivore food chain. The microbial food web transfers bacterial or small algal carbon to protozooplankton, and then to mesozooplankton, and a large percentage of this carbon is also available for the gelatinous predators. Because zooplankton are not able to feed on dissolved organic matter and cyanobacteria, the combined feeding activity of zooplankton either by direct (phytoplankton) or indirect (microbial) pathways increases the yield of PP reaching the zooplankton and, eventually, the upper trophic levels. Our findings suggest that the carrying capacity for larger omnivorous and carnivorous metazoans, and even for commercially exploitable pelagic fishes, might be considerably larger than that expected from a simple herbivore‐dominated food chain in coastal upwelling areas.

Recruitment success at the early life stages is a critical process for zooplankton demography. Copepods often dominate the zooplankton in marine coastal zones and are prey of the majority of fish larvae. Hypotheses interpreting variations of copepod recruitment are based on the concepts of “naupliar predation,” “nutritional deficiency,” and “toxic effect” of diatom diets. Contradictory laboratory and field studies have reached opposite conclusions on the effects of diatoms on copepod reproductive success, blurring our view of marine food‐web energy flow from diatoms to higher consumers by means of copepods. Here we report estimates of copepod feeding selectivity and reproduction in response to seasonally changing phytoplankton characteristics measured in a highly productive coastal upwelling area off the coast of central Chile. The variable phytoplankton diversity and changing food quality had a strong and highly significant impact on the feeding selectivity, reproduction, and larval survival of three indigenous copepod species. Seasonal changes in copepod feeding behavior were related to the alternating protozoan–diatom diets, mostly based on dinoflagellates and ciliates during winter and autumn (low highly unsaturated fatty acids [HUFA]/polyunsaturated fatty acids [PUFA] availability), but switched to a diet of centric and chain‐forming diatoms (high HUFA/PUFA availability) during the spring/summer upwelling period. Ingestion of diatom cells induced a positive effect on egg production. However, a negative relationship was found between egg hatching success, naupliar survival, and diatom ingestion. Depending on the phytoplankton species, diets had different effects on copepod reproduction and recruitment. In consequence, it seems that the classical marine food web model does not apply to some coastal upwelling systems.