Rubayat Islam Khan

Mr. Rubayat Islam Khan

orcid

Research Focus & Metrics

Academic Career Length

9Years (2018-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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Verified
Journal Article
Open access
PDF file
RARaushanara Akter
Raushanara Akter
AAAfrina Afrose
Afrina Afrose
Md Rashidur RahmanMd Rashidur Rahman
Md Rashidur Rahman
RCRakhi Chowdhury
Rakhi Chowdhury
SNSaif Nirzhor
Saif Nirzhor
TKTanvir Kabir
Tanvir Kabir
Natural products have long been used as drugs to treat a wide array of human diseases. The lead compounds discovered from natural sources are used as novel templates for developing more potent and safer drugs. Natural products produce biological activity by binding with biological macromolecules, since natural products complement the protein-binding sites and natural product–protein interactions are already optimized in nature. Sirtuin 6 (SIRT6) is an NAD+ dependent histone deacetylase enzyme and a unique Sirtuin family member. It plays a crucial role in different molecular pathways linked to DNA repair, tumorigenesis, glycolysis, gluconeogenesis, neurodegeneration, cardiac hypertrophic responses, etc. Thus, it has emerged as an exciting target of several diseases such as cancer, neurodegenerative diseases, aging, diabetes, metabolic disorder, and heart disease. Recent studies have shown that natural compounds can act as modulators of SIRT6. In the current review, a list of natural products, their sources, and their mechanisms of SIRT6 activity modulation has been compiled. The potential application of these naturally occurring SIRT6 modulators in the amelioration of major human diseases such as Alzheimer’s disease, aging, diabetes, inflammation, and cancer has also been delineated. Natural products such as isoquercetin, luteolin, and cyanidin act as SIRT6 activators, whereas vitexin, catechin, scutellarin, fucoidan, etc. work as SIRT6 inhibitors. It is noteworthy to mention that quercetin acts as both SIRT6 activator and inhibitor depending on its concentration used. Although none of them were found as highly selective and potent modulators of SIRT6, they could serve as the starting point for developing selective and highly potent scaffolds for SIRT6.

29 June 2018 in Biomolecules
Verified
Journal Article
Open access
PDF file
RKRubayat Islam Khan
Rubayat Islam Khan
SNSaif Nirzhor
Saif Nirzhor
RARaushanara Akter
Raushanara Akter
Sirtuin 6 (SIRT6) is a nicotinamide adenine dinucleotide+ (NAD+) dependent enzyme and stress response protein that has sparked the curiosity of many researchers in different branches of the biomedical sciences. A unique member of the known Sirtuin family, SIRT6 has several different functions in multiple different molecular pathways related to DNA repair, glycolysis, gluconeogenesis, tumorigenesis, neurodegeneration, cardiac hypertrophic responses, and more. Only in recent times, however, did the potential usefulness of SIRT6 come to light as we learned more about its biochemical activity, regulation, biological roles, and structure Frye (2000). Even until very recently, SIRT6 was known more for chromatin signaling but, being a nascent topic of study, more information has been ascertained and its potential involvement in major human diseases including diabetes, cancer, neurodegenerative diseases, and heart disease. It is pivotal to explore the mechanistic workings of SIRT6 since future research may hold the key to engendering strategies involving SIRT6 that may have significant implications for human health and expand upon possible treatment options. In this review, we are primarily concerned with exploring the latest advances in understanding SIRT6 and how it can alter the course of several life-threatening diseases such as processes related to aging, cancer, neurodegenerative diseases, heart disease, and diabetes (SIRT6 has also shown to be involved in liver disease, inflammation, and bone-related issues) and any recent promising pharmacological investigations or potential therapeutics that are of interest.

10 September 2018 in Biomolecules
Verified
Journal Article
Open access
PDF file
SNSaif Nirzhor
Saif Nirzhor
RKRubayat Islam Khan
Rubayat Islam Khan
SNSharmind Neelotpol
Sharmind Neelotpol
Even though Alzheimer’s disease (AD) is of significant interest to the scientific community, its pathogenesis is very complicated and not well-understood. A great deal of progress has been made in AD research recently and with the advent of these new insights more therapeutic benefits may be identified that could help patients around the world. Much of the research in AD thus far has been very neuron-oriented; however, recent studies suggest that glial cells, i.e., microglia, astrocytes, oligodendrocytes, and oligodendrocyte progenitor cells (NG2 glia), are linked to the pathogenesis of AD and may offer several potential therapeutic targets against AD. In addition to a number of other functions, glial cells are responsible for maintaining homeostasis (i.e., concentration of ions, neurotransmitters, etc.) within the central nervous system (CNS) and are crucial to the structural integrity of neurons. This review explores the: (i) role of glial cells in AD pathogenesis; (ii) complex functionalities of the components involved; and (iii) potential therapeutic targets that could eventually lead to a better quality of life for AD patients.

26 August 2025
Verified
Book Chapter
Open access
Don RoosanDon Roosan
Don Roosan
RKRubayat Islam Khan
Rubayat Islam Khan
TKTiffany Khou
Tiffany Khou
SNSaif Nirzhor
Saif Nirzhor
FHFahmida Hai
Fahmida Hai
BPBrian Provencher
Brian Provencher
The objective of this paper is to investigate the structural stability, dynamic properties, and potential interactions among Amyloid Precursor Protein (APP), Tau, and Alpha-synuclein through a series of molecular dynamics simulations that integrate publicly available structural data, detailed force-field parameters, and comprehensive analytical protocols. By focusing on these three proteins, which are each implicated in various neurodegenerative disorders, the study aims to elucidate how their conformational changes and interprotein contact sites may influence larger biological processes. Through rigorous evaluation of their folding behaviors, energetic interactions, and residue-specific functions, this work contributes to the broader understanding of protein aggregation mechanisms and offers insights that may ultimately guide therapeutic intervention strategies.

26 August 2025
Verified
Book Chapter
Open access
Don RoosanDon Roosan
Don Roosan
RKRubayat Islam Khan
Rubayat Islam Khan
MAMd Rahatul Ashakin
Md Rahatul Ashakin
TKTiffany Khou
Tiffany Khou
SNSaif Nirzhor
Saif Nirzhor
MHMohammad Rifat Haider
Mohammad Rifat Haider
Accurate prediction of cancer type and primary tumor site is critical for effective diagnosis, personalized treatment, and improved outcomes. Traditional models struggle with the complexity of genomic and clinical data, but quantum computing offers enhanced computational capabilities. This study develops a hybrid quantum-classical transformer model, incorporating quantum attention mechanisms via variational quantum circuits (VQCs) to improve prediction accuracy. Using 30,000 anonymized cancer samples from the Genome Warehouse (GWH), data preprocessing included cleaning, encoding, and feature selection. Classical self-attention modules were replaced with quantum attention layers, with classical data encoded into quantum states via amplitude encoding. The model, trained using hybrid backpropagation and quantum gradient calculations, outperformed the classical transformer model, achieving 92.8% accuracy and an AUC of 0.96 compared to 87.5% accuracy and an AUC of 0.89. It also demonstrated 35% faster training and 25% fewer parameters, highlighting computational efficiency. These findings showcase the potential of quantum-enhanced transformers to advance biomedical data analysis, enabling more accurate diagnostics and personalized medicine.

29 August 2018 in Preprints.org
Verified
Preprint
Open access
RKRubayat Islam Khan
Rubayat Islam Khan
SNSaif Nirzhor
Saif Nirzhor
RARaushanara Akter
Raushanara Akter
SIRT6 is a NAD+ dependent enzyme and stress response protein that has sparked the curiosity of a plethora of researchers in different branches of the biomedical sciences. A unique member of the known Sirtuin family, SIRT6 has several different functions in several different molecular pathways related to DNA repair, glycolysis, gluconeogenesis, tumorigenesis, neurodegeneration, cardiac hypertrophic responses and so on. Only in recent times however did the potential usefulness of SIRT6 come to light as we learned more about its biochemical activity, regulation, biological roles and structure [1]. Even until very recently, SIRT6 was known more for chromatin signaling but being a nascent topic of study, more information has been ascertained and its potential involvement in major human diseases namely, diabetes, cancer, neurodegenerative diseases and heart disease has been demonstrated. It is pivotal to explore the mechanistic workings of SIRT6 since future research may hold the key to engendering strategies, involving SIRT6, that may have significant implications for human health and expand upon possible treatment options. In this review, we are primarily concerned with exploring the latest understanding of SIRT6 and how it can alter the course of several life-threatening diseases that cripple today’s society such as processes related to aging, cancer, neurodegenerative diseases, heart disease and diabetes. In addition, SIRT6 has shown to be involved in liver disease, inflammation and bone related issues but more emphasis is given to the former. Lastly, any recent promising pharmacological investigations and study of potential therapeutic targets are also delineated in this review.