Abhithaj Jayanandan

Dr. Abhithaj Jayanandan

orcid

Research Focus & Metrics

Academic Career Length

2Years (2025-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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12 May 2025 in Scientific Reports
Verified
Journal Article
Open access
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LJLevin John
Levin John
LDLeona Dcunha
Leona Dcunha
MAMukhtar Ahmed
Mukhtar Ahmed
STSonet D Thomas
Sonet D Thomas
RRRajesh Raju
Rajesh Raju
AJAbhithaj Jayanandan
Abhithaj Jayanandan
Deforestation, urbanization, and climate change have significantly increased the risk of zoonotic diseases. Nipah virus (NiV) of Paramyxoviridae family and Henipavirus genus is transmitted by Pteropus bats. Climate-induced changes in bat migration patterns and food availability enhances the virus’s adaptability, in turn increasing the potential for transmission and outbreak risk. NiV infection has high human fatality rate. With no antiviral drugs or vaccines available, exploring the complex machinery involved in viral RNA synthesis presents a promising target for therapy. Drug repurposing provides a fast-track approach by identifying existing drugs with potential to target NiV RNA-dependent RNA polymerase (L), bypassing the time-consuming process of developing novel compounds. To facilitate this, we developed an attention-based deep learning model that utilizes pharmacophore properties of the active sites and their binding efficacy with NiV L protein. Around 500 FDA-approved drugs were filtered and assessed for their ability to bind NiV L protein. Compared to the control Remdesivir, we identified Cangrelor, an antiplatelet drug for cardiovascular diseases, with stronger binding affinity to NiV L (glide score of -12.30 kcal/mol). Molecular dynamics simulations further revealed stable binding (RMSD of 3.54 Å) and a post-MD binding energy of -181.84 kcal/mol. The strong binding of Cangrelor is illustrated through trajectory analysis, principal component analysis, and solvent accessible surface area, further confirming the stable interaction with the active site of NiV RdRp. Cangrelor can interact with NiV L protein and may potentially interfere with its replication. These findings suggest that Cangrelor will be a potential drug candidate that can effectively interact with the NiV L protein and potentially disrupt the viral replication. Further in vivo studies are warranted to explore its potential as a repurposable antiviral drug.

2 May 2025 in Molecular Diversity
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Journal Article
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ATAmritha Thaikkad
Amritha Thaikkad
FTFathimath Henna TP
Fathimath Henna TP
STSonet D Thomas
Sonet D Thomas
LJLevin John
Levin John
RRRajesh Raju
Rajesh Raju
AJAbhithaj Jayanandan
Abhithaj Jayanandan

26 July 2025 in European Journal of Medicinal Chemistry Reports
Verified
Journal Article
Open access
FTFathimath Henna TP
Fathimath Henna TP
GKG. Arun Kumar
G. Arun Kumar
ATAmritha Thaikkad
Amritha Thaikkad
VKVarun T K
Varun T K
EVE. Jayadevi Variyar
E. Jayadevi Variyar
AJAbhithaj Jayanandan
Abhithaj Jayanandan


18 June 2025 in Organic & Biomolecular Chemistry
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Journal Article
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MRMangari Madhusudhan Reddy
Mangari Madhusudhan Reddy
AJAbhithaj Jayanandan
Abhithaj Jayanandan
EREeda Koti Reddy
Eeda Koti Reddy
SAShaik Anwar
Shaik Anwar
SCSadasivan C
Sadasivan C
To identify a lead for Alzheimer's treatment, novel tacrine derivatives were synthesized. Among them, compound 3c showed strong AChE binding (glide score −11.49 kcal mol −1 , binding energy −75.04 kcal mol −1 ) and potent inhibition of IC 50 = 46.8 nM.

5 December 2025 in Frontiers in Bioinformatics
Verified
Journal Article
Open access
VSVineetha Shaji
Vineetha Shaji
AAAkash Anil
Akash Anil
AJAyisha A. Jabbar
Ayisha A. Jabbar
AMAlthaf Mahin
Althaf Mahin
ARAhmad Rafi
Ahmad Rafi
RRRajesh Raju
Rajesh Raju
Nipah virus (NiV) is a zoonotic pathogen that causes recurrent outbreaks with considerable implications for public health. Viruses engage host kinases to phosphorylate viral proteins, aiding replication and host disruption. Identifying NiV phosphoproteins and their host kinases is therefore critical for understanding the mechanism of infection and developing therapeutics. We performed kinase-substrate phosphomotif analysis based on prior studies and employed computational tools to identify putative phosphosites in NiV proteins and corresponding host kinases. Redundancy analysis highlighted key kinases capable of phosphorylating multiple NiV proteins and high-potential viral substrates. Integration with human–viral protein–protein interaction data revealed human kinase substrate proteins in human that interact with NiV proteins, while conservation analysis assessed phosphosites across nine NiV proteins in various strains. The functional significance of the identified and predicted viral substrates and their corresponding host kinases was further validated through in silico docking and molecular dynamics simulation (MD). Motif-based kinase-substrate analysis identified 51 human kinases predicted to target 1180 phosphorylation sites across nine NiV proteins, including key human kinases such as Eukaryotic elongation factor 2 kinase [EEF2K], Haploid germ cell-specific nuclear protein kinase [HASPIN], Mitogen-activated protein kinase 9 [MAPK9], Microtubule-associated serine/threonine-protein kinase 2 [MAST2], and Spleen tyrosine kinase [SYK], with the potential to phosphorylate multiple sites across NiV proteins. Using computational prediction tools, we identified several potential phosphorylation sites on NiV proteins, along with their corresponding candidate human kinases. In silico docking revealed interactions between EEF2K and both the NiV Fusion Glycoprotein and NiV Phosphoprotein (P), MAPK9 with the NiV Matrix Protein, and HASPIN with NiV RNA-dependent RNA polymerase. MD simulations of the EEF2K–NiV Fusion Glycoprotein complex confirmed the stability of this interaction. Leucine-rich repeat serine/threonine-protein kinase 2 [LRRK2], HASPIN, MAST2, and EEF2K were the human kinases predicted to phosphorylate experimentally validated sites on NiV nucleocapsid (N), P, and W proteins. Furthermore, through an extensive literature review, we investigated the therapeutic potential of targeting these kinases using known inhibitors and identified compounds that could potentially be repurposed as antiviral agents against NiV infection. Our findings indicate that EEF2K phosphorylates key NiV proteins at conserved phosphosites across variants, underscoring the pathogenic significance of kinases in NiV infection and their potential as therapeutic targets.