Deforestation, urbanization, and climate change have significantly increased the risk of zoonotic diseases. Nipah virus (NiV) of Paramyxoviridae family and Henipavirus genus is transmitted by Pteropus bats. Climate-induced changes in bat migration patterns and food availability enhances the virus’s adaptability, in turn increasing the potential for transmission and outbreak risk. NiV infection has high human fatality rate. With no antiviral drugs or vaccines available, exploring the complex machinery involved in viral RNA synthesis presents a promising target for therapy. Drug repurposing provides a fast-track approach by identifying existing drugs with potential to target NiV RNA-dependent RNA polymerase (L), bypassing the time-consuming process of developing novel compounds. To facilitate this, we developed an attention-based deep learning model that utilizes pharmacophore properties of the active sites and their binding efficacy with NiV L protein. Around 500 FDA-approved drugs were filtered and assessed for their ability to bind NiV L protein. Compared to the control Remdesivir, we identified Cangrelor, an antiplatelet drug for cardiovascular diseases, with stronger binding affinity to NiV L (glide score of -12.30 kcal/mol). Molecular dynamics simulations further revealed stable binding (RMSD of 3.54 Å) and a post-MD binding energy of -181.84 kcal/mol. The strong binding of Cangrelor is illustrated through trajectory analysis, principal component analysis, and solvent accessible surface area, further confirming the stable interaction with the active site of NiV RdRp. Cangrelor can interact with NiV L protein and may potentially interfere with its replication. These findings suggest that Cangrelor will be a potential drug candidate that can effectively interact with the NiV L protein and potentially disrupt the viral replication. Further in vivo studies are warranted to explore its potential as a repurposable antiviral drug.
19 June 2024 in Journal of Proteins and Proteomics
The GFPT2 protein, also known as glutamine-fructose-6-phosphate aminotransferase 2, regulates glucose flux through the hexosamine biosynthesis pathway (HBP). It is primarily expressed in the spinal cord and central nervous system and is notably abundant in various cancers while being dysregulated in diabetes. Despite its significant role in critical diseases, the phospho-regulatory mechanisms governing GFPT2 function remain largely unexplored. To investigate the phospho-signaling networks of GFPT2, an analysis of the global phosphoproteomes examining GFPT2 phosphorylation sites (PS) across diverse experimental conditions was conducted. By compiling 448 qualitative and 74 quantitative differential cellular phosphoproteome datasets, a key phosphorylation site, S244, was identified in GFPT2, appearing in approximately 81 % of these datasets. Surprisingly, the functional significance of this phosphosite had not been studied or reported. A targeted strategy was employed to identify PS in proteins whose expression coregulated with the primary GFPT2 phosphorylation site. Subsequent functional analysis of these coregulated proteins revealed associations with neuronal disorders. Classification of coregulated phosphosites in proteins as known and predicted GFPT2 interactors, kinases, and substrates enabled the inference of regulatory phospho-signaling dynamics associated with GFPT2. Further, GFPT2 phosphorylation at S244 was identified to be regulated by two potential upstream kinases CHEK1 and PKN1, that showed positive coregulation with kinase activity increasing phosphosites. These findings provide novel insights into the cellular phospho-signaling networks associated with GFPT2, offering potential implications for therapeutic interventions.