The Amazon Basin is an unquestionable biodiversity hotspot, containing the highest freshwater biodiversity on earth and facing off a recent increase in anthropogenic threats. The current knowledge on the spatial distribution of the freshwater fish species is greatly deficient in this basin, preventing a comprehensive understanding of this hyper-diverse ecosystem as a whole. Filling this gap was the priority of a transnational collaborative project, i.e. the AmazonFish project - https://www.amazon-fish.com/. Relying on the outputs of this project, we provide the most complete fish species distribution records covering the whole Amazon drainage. The database, including 2,406 validated freshwater native fish species, 232,936 georeferenced records, results from an extensive survey of species distribution including 590 different sources (e.g. published articles, grey literature, online biodiversity databases and scientific collections from museums and universities worldwide) and field expeditions conducted during the project. This database, delivered at both georeferenced localities (21,500 localities) and sub-drainages grains (144 units), represents a highly valuable source of information for further studies on freshwater fish biodiversity, biogeography and conservation.

Freshwater fish communities in Ecuador exhibit some of the highest levels of diversity and endemism in the Neotropics. Unfortunately, aquatic ecosystems in the country are under serious threat and conditions are deteriorating. In 2018–19, the government of Ecuador sponsored a series of workshops to examine the conservation status of Ecuador's freshwater fishes. Concerns were identified for 35 species, most of which are native to the Amazon region, and overfishing of Amazonian pimelodid catfishes emerged as a major issue. However, much of the information needed to make decisions across fish groups and regions was not available, hindering the process and highlighting the need for a review of the conservation threats to Ecuador's freshwater fishes. Here, we review how the physical alteration of rivers, deforestation, wetland and floodplain degradation, agricultural and urban water pollution, mining, oil extraction, dams, overfishing, introduced species and climate change are affecting freshwater fishes in Ecuador. Although many of these factors affect fishes throughout the Neotropics, the lack of data on Ecuadorian fish communities is staggering and highlights the urgent need for more research. We also make recommendations, including the need for proper enforcement of existing environmental laws, restoration of degraded aquatic ecosystems, establishment of a national monitoring system for freshwater ecosystems, investment in research to fill gaps in knowledge, and encouragement of public engagement in citizen science and conservation efforts. Freshwater fishes are an important component of the cultural and biological legacy of the Ecuadorian people. Conserving them for future generations is critical.

The escalating industrial and artisanal extraction of natural resources in the Amazon Basin has centered it into the spotlight of global environmental concern. This study deals with the environmental problems of heavy metals pollution and biomagnification, which stem from mining, agricultural, petrochemical, and industrial discharges. We conducted an extensive investigation, analyzing 360 fish specimens representing 58 species, to assess the concentrations of 11 metals (Al, As, Cd, Cr, Cu, He, Mn, Ni, Pb, Zn, and Hg) along the Ecuadorian sections of the Napo and Pastaza watersheds. Stable isotope analyses (δ¹⁵N and δ¹³C) were employed to determine their trophic positions and potential biomagnification risks. Sampling was carried out during two distinct hydrological seasons to capture seasonal variations in metal concentrations. Furthermore, we estimated species-specific daily heavy metal intake levels. The results of our study revealed that 15 fish species and 53 individual specimens exhibited heavy metal concentrations surpassing recommended standards, with elevated levels of Al, As, and Hg posing significant risks to human consumers with daily intakes of 0.46 kg/day. Notably, our investigation unveiled concerning trends, including increased metal concentrations, Hg biomagnification within fish populations from the Pastaza watershed, and an association between smaller fish size and higher metal content. This study provides a crucial baseline for monitoring future environmental changes and understanding the persistent impacts of heavy metal pollution in the Ecuadorian Amazon region and the broader Western Amazon. It underscores the urgent need for sustainable environmental management practices to mitigate the escalating threat to these vital ecosystems.

Ancistrus Kner, 1854, is the most diverse genus among the Ancistrini (Loricariidae) with 70 valid species showing a wide geographic distribution and great taxonomic and systematic complexity. To date, about 40 Ancistrus taxa have been karyotyped, all from Brazil and Argentina, but the statistic is uncertain because 30 of these reports deal with samples that have not yet been identified at the species level. This study provides the first cytogenetic description of the bristlenose catfish, Ancistrus clementinae Rendahl, 1937, a species endemic to Ecuador, aiming to verify whether a sex chromosome system is identifiable in the species and, if so, which, and if its differentiation is associated with the presence of repetitive sequences reported for other species of the family. We associated the karyotype analysis with the COI molecular identification of the specimens. Karyotype analysis suggested the presence of a ♂ZZ/♀ZW₁W₂ sex chromosome system, never detected before in Ancistrus, with both W₁W₂ chromosomes enriched with heterochromatic blocks and 18S rDNA, in addition to GC-rich repeats (W₂). No differences were observed between males and females in the distribution of 5S rDNA or telomeric repeats. Cytogenetic data here obtained confirm the huge karyotype diversity of Ancistrus, both in chromosome number and sex-determination systems.

An annotated list of the freshwater fishes of the Limoncocha Lagoon, in the Limoncocha Biological Reserve in the northern Amazon region of Ecuador is presented. Fishes were captured between March and July of 2012, and we combined these results with previous studies to provide a comprehensive list of fishes in the Limoncocha Biological Reserve. Thirty-three species belonging to 14 families distributed in 7 orders were collected. The most representative orders in number of species and specimens were Characiformes, Siluriformes, and Perciformes, respectively, being Characiformes as the most important in terms of richness and abundance of species. Characidae (Characiformes) exhibited the greatest abundance and broadest distribution in our samples. A short morphological description and morphometric measurements of each species are also presented.