Bouke Boekema

Bouke Boekema

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Research Focus & Metrics

Academic Career Length

29Years (1998-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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10 January 2018 in Science Translational Medicine
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ABAnna de Breij
Anna de Breij
Martijn RioolMartijn Riool
Martijn Riool
RCRobert A. Cordfunke
Robert A. Cordfunke
NMNermina Malanovic
Nermina Malanovic
LBLeonie de Boer
Leonie de Boer
PNPeter H. Nibbering
Peter H. Nibbering
Development of novel antimicrobial agents is a top priority in the fight against multidrug-resistant (MDR) and persistent bacteria. We developed a panel of synthetic antimicrobial and antibiofilm peptides (SAAPs) with enhanced antimicrobial activities compared to the parent peptide, human antimicrobial peptide LL-37. Our lead peptide SAAP-148 was more efficient in killing bacteria under physiological conditions in vitro than many known preclinical- and clinical-phase antimicrobial peptides. SAAP-148 killed MDR pathogens without inducing resistance, prevented biofilm formation, and eliminated established biofilms and persister cells. A single 4-hour treatment with hypromellose ointment containing SAAP-148 completely eradicated acute and established, biofilm-associated infections with methicillin-resistant Staphylococcus aureus and MDR Acinetobacter baumannii from wounded ex vivo human skin and murine skin in vivo. Together, these data demonstrate that SAAP-148 is a promising drug candidate in the battle against antibiotic-resistant bacteria that pose a great threat to human health.

22 February 2021 in Frontiers in Microbiology
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GDGabrielle S. Dijksteel
Gabrielle S. Dijksteel
MUMagda M. W. Ulrich
Magda M. W. Ulrich
EMEsther Middelkoop
Esther Middelkoop
Bouke BoekemaBouke Boekema
Bouke Boekema
Antimicrobial peptides (AMPs) or host defense peptides protect the host against various pathogens such as yeast, fungi, viruses and bacteria. AMPs also display immunomodulatory properties ranging from the modulation of inflammatory responses to the promotion of wound healing. More interestingly, AMPs cause cell disruption through non-specific interactions with the membrane surface of pathogens. This is most likely responsible for the low or limited emergence of bacterial resistance against many AMPs. Despite the increasing number of antibiotic-resistant bacteria and the potency of novel AMPs to combat such pathogens, only a few AMPs are in clinical use. Therefore, the current review describes (i) the potential of AMPs as alternatives to antibiotics, (ii) the challenges toward clinical implementation of AMPs and (iii) strategies to improve the success rate of AMPs in clinical trials, emphasizing the lessons we could learn from these trials.

8 April 2013 in Journal of Physics D: Applied Physics
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CGC A J van Gils
C A J van Gils
SHS Hofmann
S Hofmann
Bouke BoekemaBouke Boekema
Bouke Boekema
RBRonny Brandenburg
Ronny Brandenburg
PBPeter Bruggeman
Peter Bruggeman

14 November 2022 in Frontiers in Immunology
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Patrick P.G. MulderPatrick P.G. Mulder
Patrick P.G. Mulder
MVMarcel Vlig
Marcel Vlig
EFEsther Fasse
Esther Fasse
MSMatthea M. Stoop
Matthea M. Stoop
APAnouk Pijpe
Anouk Pijpe
HKHans J.P.M. Koenen
Hans J.P.M. Koenen
The systemic and local immune response in burn patients is often extreme and derailed. As excessive inflammation can damage healthy tissues and slow down the healing process, modulation of inflammatory responses could limit complications and improve recovery. Due to its complexity, more detailed information on the immune effects of thermal injury is needed to improve patient outcomes. We therefore characterized and quantified subsets of immune cells and mediators present in human burn wound tissue (eschar), sampled at various time points. This study shows that after burn injury, the number of immune cells were persistently increased, unlike the normal wound healing process. There was an immediate, strong increase in neutrophils and a moderate increase in monocytes/macrophages and lymphocytes, especially in the second and third week post burn. The percentage of classical (CD14highCD16-) monocytes/macrophages demonstrated a steady decrease over time, whereas the proportion of intermediate (CD14highCD16+) monocytes/macrophages slowly increased. The absolute numbers of T cells, NK cells and B cells increased up to week 3, while the fraction of γδ T cells was increased only in week 1. Secretome profiling revealed high levels of chemokines and an overall pro-inflammatory cytokine milieu in burn tissue. The local burn immune response shows similarities to the systemic immune reaction, but differs in neutrophil maturity and lymphocyte composition. Altogether, the neutrophil surges, high levels of pro-inflammatory cytokines and limited immunosuppression might be key factors that prolong the inflammation phase and delay the wound healing process in burns.

15 June 2007 in Applied and Environmental Microbiology
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Bouke BoekemaBouke Boekema
Bouke Boekema
ABAnke Beselin
Anke Beselin
MBMichael Breuer
Michael Breuer
BHBernhard Hauer
Bernhard Hauer
MKMargot Koster
Margot Koster
JTJan Tommassen
Jan Tommassen
Burkholderia glumae strain PG1 produces a lipase of biotechnological relevance. Lipase production by this strain and its derivative LU8093, which was obtained through classical strain improvement, was investigated under different conditions. When 10% hexadecane was included in the growth medium, lipolytic activity in both strains could be increased ∼7-fold after 24 h of growth. Hexadecane also stimulated lipase production in a strain containing the lipase gene fused to the tac promoter, indicating that hexadecane did not affect lipase gene expression at the transcriptional level, which was confirmed using lipA - gfp reporter constructs. Instead, hexadecane appeared to enhance lipase secretion, since the amounts of lipase in the culture supernatant increased in the presence of hexadecane, with a concomitant decrease in the cells, even when protein synthesis was inhibited with chloramphenicol. In the presence of olive oil as a carbon source, nonionic detergents, such as Tween 80, increased extracellular lipase activity twofold. Like hexadecane, Tween 80 appeared to stimulate lipase secretion, although in a more disruptive manner, since other, normally nonsecreted proteins were found in the culture supernatant. Additionally, like olive oil, Tween 80 was found to induce lipase gene expression in strain PG1 in medium containing sucrose as a carbon source but not in glucose-containing medium, suggesting that lipase gene expression is prone to catabolite repression. In contrast, lipase production in the lipase-overproducing strain LU8093 was independent of the presence of an inducer and was not inhibited by glucose. In conclusion, hexadecane and Tween 80 enhance lipase production in B. glumae , and they act via different mechanisms.

1 November 2013 in Journal of Materials Science: Materials in Medicine
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Bouke BoekemaBouke Boekema
Bouke Boekema
MVMarcel Vlig
Marcel Vlig
LDLeon Olde Damink
Leon Olde Damink
EMEsther Middelkoop
Esther Middelkoop
LELizette Eummelen
Lizette Eummelen
MUMagda M. W. Ulrich
Magda M. W. Ulrich