Predicting anthropogenic actions resulting in undesirable changes in aquatic systems is crucial for the development of effective and sustainable water management strategies. Due to the co-occurrence of stressors and a lack of appropriate data, the effects on large rivers are difficult to elucidate. To overcome this problem, we developed a partial canonical correspondence analyses (pCCA) model using 292 benthic invertebrate taxa from 104 sites that incorporated the effects of three stressors groups: hydromorphology, land use, and water quality. The data covered an environmental gradient from near-natural to heavily altered sites in five large rivers in Southeastern Europe. Prior to developing the multi-stressor model, we assessed the importance of natural characteristics on individual stressor groups. Stressors proved to be the dominant factors in shaping benthic invertebrate assemblages. The pCCA among stressor-groups showed that unique effects dominated over joint effects. Thus, benthic invertebrate assemblages were suitable for disentangling the specific effect of each of the three stressor groups. While the effects of hydromorphology were dominant, both water quality and land use effects were nearly equally important. Quantifying the specific effects of hydromorphological alterations, water quality, and land use will allow water managers to better understand how large rivers have changed and to better define expectations for ecosystem conditions in the future.

Under the EU Water Framework Directive, ecological assessment and management are based on type-specific reference conditions. In the EU it may be difficult to find sites in large rivers with at least near-natural conditions, though this is not the case in southeast Europe, where stretches of large rivers still exist with at least near-natural conditions, meaning that there is little or no disturbance from hydromorphological alteration, water quality, land use in the catchment and alien species. We examined benthic invertebrate assemblages in 45 samples collected from near-natural sites of several large rivers: Sava, Drava, Mura, Kupa and Una. The near-natural benthic invertebrate assemblages of large rivers contained several rare or remarkable species, especially among stoneflies, e.g., Marthamea vitripennis, Xanthoperla apicalis. We compared benthic invertebrate communities in river sections with fine and coarse substrates and in three eco-hydromorphological (ECO-HM) types of large rivers, reflecting habitat heterogeneity: lowland-deep, lowland-braided and intermountain. Multivariate analysis of variance (PERMANOVA) was used to statistically evaluate similarities among assemblages. It was found that the composition of benthic invertebrate assemblages varied by both ECO-HM types and substrate category. Similarity percentage (SIMPER) analysis showed that the average dissimilarity of benthic invertebrate assemblages was high between all ECO-HM type pairs and between fine and coarse substrate. We found that habitat heterogeneity and substrate independently influenced benthic invertebrate assemblages. To achieve ecological goals in the management of large rivers, in addition to functionality, a holistic view with at least near-natural assemblages, including the names of the taxa present, should also be considered.

The sustainable management of water bodies with hydropower plants (HPPs) and protected rheophilic fish species is challenging. The key question is whether impounded rivers can still provide habitat for protected rheophilic fish species, including Natura 2000 species. We investigated hydro-morphological conditions and fish communities, focusing on the bottom-dwelling Danube longbarbel gudgeon (Romanogobio uranoscopus) and the medium-distance migrating cactus roach (Rutilus virgo) in the Brežice HPP system on the Sava River in Slovenia. Fish sampling using an electric bottom trawl in the HPP impoundment, electrofishing in the nearshore, and video surveillance in the fish pass revealed a diverse and distinctive fish community. This community reflected rheophilic conditions in the upper impoundment and fish pass, and lentic conditions in the lower impoundment. These findings provide evidence that impounded rivers, when complemented by well-designed mitigation measures, can sustain rheophilic fish species, including the Danube longbarbel gudgeon and cactus roach. Maintaining rheophilic habitat within the impoundment, combined with a functioning river-like side channel, is crucial. However, at Brežice HPP, changes in the management of the fish pass water inflow are necessary to ensure adequate and consistent hydraulic conditions and water temperatures. Applying a knowledge co-creation approach, which requires productive interaction among scientists, managers and policy makers, could help to find the best solutions for sustainable water ecosystem management.