Rice is the important crop for more than half of the world population. However, drought can have a devastating impact on rice growth and reduce yield drastically. Understanding the response of rice to drought stress is especially important for crop breeding. Previously we found that rice enhanced its tolerance to drought stresses via stress memory mechanisms. Numerous memory genes were identified to play important roles in the process. DNA methylation was reported to mediate tolerance via regulating gene expression and enhances the survival rate of rice encountering drought stress. However, how DNA methylation involved in stress memory is still not clear. In this study, genome-wide bisulphite sequencing at a single base resolution methylome profiling level was performed and analyzed in rice cultivar under recurrent drought stresses and recovery treatments. We found that rice drought stress memory-related differentially methylated regions (DMRs) showed dynamic and distinct patterns. The drought-memory DMRs may regulate Transposable elements and gene expression to cope with short-term repeated drought stresses. Our findings of drought-memory DMRs can explain mechanisms of rice drought stress memory in a new perspective on global methylome details. Using epigenetic markers to breed drought-resistant rice would become a feasible way in the future research.

Traditional breeding strategies mainly focus on the evaluation of trait performance, but pay less attention to the changing genetic background. A comprehensive understanding of the genetic diversity of germplasms is crucial for the deliberate improvement of specific traits. A collection of 154 highland rice varieties were collected as the initial genetic resource in our breeding program to improve the pathogen resistance and eating and cooking qualities. These varieties were analyzed using a whole-genome SNP array and were clustered into three groups. Further analysis revealed that the favorable alleles of pathogen resistance genes are mostly absent in our collected varieties. However, it showed that most varieties possess favorable alleles of Waxy (Wx) and ALKALI DEGENERATION (ALK), which are able to enhance the eating and cooking qualities. Moreover, only about one fifth of all varieties harbors favorable the allele of fragrance gene Betainealdehyde dehydrogenase (BADH2). Together, these results give an overall view of the genetic constitution of the target traits, which provide useful information for future genetic improvement in breeding practices.

Rice is a staple food for more than half of the global population, but its production is threatened by insect pests such as planthoppers, stem borers, leafhoppers, and defoliators. The widespread use of chemical pesticides has raised concerns regarding environmental contamination, pest resistance, and negative effects on beneficial arthropods. This review examines the role of biological control and habitat management in sustainable rice pest management. It highlights the diversity and ecological roles of natural enemies, including parasitoid wasps, mirid bugs, ladybird beetles, and spiders, which help suppress pest populations in rice ecosystems. Key habitat management approaches, such as conservation biological control, ecological engineering, banker plant systems, flower strips, and the preservation of non-crop habitats, are discussed for their capacity to enhance the abundance and effectiveness of natural enemies. The review also considers integrating these approaches into IPM programs to reduce reliance on pesticides while maintaining crop productivity. Evidence from rice-growing regions demonstrates the effectiveness of habitat-based strategies in improving pest suppression and strengthening ecosystem resilience. However, challenges related to landscape complexity, farmer adoption, long-term implementation, and the need for a clear roadmap for future landscape-scale entomological research remain. Future research should focus on optimizing habitat management practices and integrating ecological approaches with modern agricultural technologies to support sustainable rice production.