Benjamin Mora

Dr. Benjamin Mora


Research Focus & Metrics

Academic Career Length

25Years (2002-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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1 August 2008 in IEEE Transactions on Visualization and Computer Graphics
Verified
Journal Article
Closed access
BMBenjamin Mora
Benjamin Mora
RMRoss Maciejewski
Ross Maciejewski
MCMin Chen
Min Chen
DEDavid Ebert
David Ebert
The availability of commodity volumetric displays provides ordinary users with a new means of visualizing 3D data. Many of these displays are in the class of isotropically emissive light devices, which are designed to directly illuminate voxels in a 3D frame buffer, producing x-ray-like visualizations. While this technology can offer intuitive insight into a 3D object, the visualizations are perceptually different from what a computer graphics or visualization system would render on a 2D screen. This paper formalizes rendering on isotropically emissive displays and introduces a novel technique that emulates traditional rendering effects on isotropically emissive volumetric displays, delivering results that are much closer to what is traditionally rendered on regular 2D screens. Such a technique can significantly broaden the capability and usage of isotropically emissive volumetric displays. Our method takes a 3D data set or object as the input, creates an intermediate light field, and outputs a special 3D volume data set called a lumi-volume. This lumi-volume encodes approximated rendering effects in a form suitable for display with accumulative integrals along unobtrusive rays. When a lumi-volume is fed directly into an isotropically emissive volumetric display, it creates a 3D visualization with surface shading effects that are familiar to the users. The key to this technique is an algorithm for creating a 3D lumi-volume from a 4D light field. In this paper, we discuss a number of technical issues, including transparency effects due to the dimension reduction and sampling rates for light fields and lumi-volumes. We show the effectiveness and usability of this technique with a selection of experimental results captured from an isotropically emissive volumetric display, and we demonstrate its potential capability and scalability with computer-simulated high-resolution results.

1 December 2002 in International Journal of Shape Modeling
Verified
Journal Article
Closed access
LBLoic Barthe
Loic Barthe
BMBenjamin Mora
Benjamin Mora
NDNeil Dodgson
Neil Dodgson
MSMalcolm Sabin
Malcolm Sabin

8 December 2025 in Applied Sciences
Verified
Journal Article
Open access
PDF file
SESegmenting Breast Ultrasound Scans Using a Generat Eshkiki
Segmenting Breast Ultrasound Scans Using a Generat Eshkiki
FTFarinaz Tanhaei
Farinaz Tanhaei
Fabio CaraffiniFabio Caraffini
Fabio Caraffini
BMBenjamin Mora
Benjamin Mora
This review investigates the application of Explainable Artificial Intelligence (XAI) in biomedical informatics, encompassing domains such as medical imaging, genomics, and electronic health records. Through a systematic analysis of 43 peer-reviewed articles, we examine current trends, as well as the strengths and limitations of methodologies currently used in real-world healthcare settings. Our findings highlight a growing interest in XAI, particularly in medical imaging, yet reveal persistent challenges in clinical adoption, including issues of trust, interpretability, and integration into decision-making workflows. We identify critical gaps in existing approaches and underscore the need for more robust, human-centred, and intrinsically interpretable models, with only 44% of the papers studied proposing human-centred validations. Furthermore, we argue that fairness and accountability, which are key to the acceptance of AI in clinical practice, can be supported by the use of post hoc tools for identifying potential biases but ultimately require the implementation of complementary fairness-aware or causal approaches alongside evaluation frameworks that prioritise clinical relevance and user trust. This review provides a foundation for advancing XAI research on the development of more transparent, equitable, and clinically meaningful AI systems for use in healthcare.

11 February 2022 in Machine Learning with Applications
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Journal Article
Open access
ONOmniah H. Nagoor
Omniah H. Nagoor
JWJoss Whittle
Joss Whittle
Jingjing DengJingjing Deng
Jingjing Deng
BMBenjamin Mora
Benjamin Mora
Mark W. JonesMark W. Jones
Mark W. Jones

28 January 2025 in Journal of Heuristics
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Journal Article
Open access
PDF file
LMLily Major
Lily Major
ACAmanda Clare
Amanda Clare
JDJacqueline Daykin
Jacqueline Daykin
BMBenjamin Mora
Benjamin Mora
CZChristine Zarges
Christine Zarges
The Burrows–Wheeler Transform (BWT) is a string transformation technique widely used in areas such as bioinformatics and file compression. Many applications combine a run-length encoding (RLE) with the BWT in a way which preserves the ability to query the compressed data efficiently. However, these methods may not take full advantage of the compressibility of the BWT as they do not modify the alphabet ordering for the sorting step embedded in computing the BWT. Indeed, any such alteration of the alphabet ordering can have a considerable impact on the output of the BWT, in particular on the number of runs. For an alphabet $$\Sigma $$ Σ containing $$\sigma $$ σ characters, the space of all alphabet orderings is of size $$\sigma !$$ σ ! . While for small alphabets an exhaustive investigation is possible, finding the optimal ordering for larger alphabets is not feasible. Therefore, there is a need for a more informed search strategy than brute-force sampling the entire space, which motivates a new heuristic approach. In this paper, we explore the non-trivial cases for the problem of minimizing the size of a run-length encoded BWT (RLBWT) via selecting a new ordering for the alphabet. We show that random sampling of the space of alphabet orderings usually gives sub-optimal orderings for compression and that a local search strategy can provide a large improvement in relatively few steps. We also inspect a selection of initial alphabet orderings, including ASCII, letter appearance, and letter frequency. While this alphabet ordering problem is computationally hard we demonstrate gain in compressibility.

31 August 2020
Verified
Book Chapter
Closed access
PDF file
LMLily Major
Lily Major
ACAmanda Clare
Amanda Clare
JDJacqueline Daykin
Jacqueline Daykin
BMBenjamin Mora
Benjamin Mora
LGLeonel Jose Peña Gamboa
Leonel Jose Peña Gamboa
CZChristine Zarges
Christine Zarges