The root of the perennial herb Angelica sinensis is a widely used source for traditional Chinese medicines. While the plant thrives in cool-moist regions of western China, early bolting and flowering (EBF) for young plants significantly reduces root quality and yield. Approaches to inhibit EBF by changes in physiology during the vernalization process have been investigated; however, the mechanism for activating EBF is still limited. Here, transcript profiles for bolted and unbolted plants (BP and UBP, respectively) were compared by transcriptomic analysis, expression levels of candidate genes were validated by qRT-PCR, and the accumulations of gibberellins (GA₁, GA₄, GA₈, GA₉ and GA₂₀) were also monitored by HPLC-MS/MS. A total of over 72,000 unigenes were detected with ca. 2600 differentially expressed genes (DEGs) observed in the BP compared with UBP. While various signaling pathways participate in flower induction, it is genes associated with floral development and the sucrose pathway that are observed to be coordinated in EBF plants, coherently up- and down-regulating flowering genes that activate and inhibit flowering, respectively. The signature transcripts pattern for the developmental pathways that drive flowering provides insight into the molecular signals that activate plant EBF.

Hypericin (Hyp), well-known as an antidepressant, is mainly extracted from Hypericum perforatum. Although Hyp accumulation and biomass are greater at lower compared to higher temperature, the regulation mechanism has not been reported. Here, the physiological characteristics and transcriptome of H. perforatum grown at 15 and 22 °C were determined and analyzed by HPLC and de novo sequencing. The results showed that the stomatal density and opening percentages were 1.1- and 1.4-fold more, and the Hyp content was 4.5-fold greater at 15 °C compared to 22 °C. A total of 1584 differentially expressed genes (DEGs) were observed at 15 versus 22 °C, with 749 characterized genes, 421 upregulated (UR) and 328 downregulated (DR). Based on biological functions, 150 genes were associated with Hyp biosynthesis, plant growth and the stress response, including photosynthesis, carbohydrate metabolism, fatty acids metabolism, cytochrome P450 (CYPs), morpho-physiological traits, heat shock proteins (HSPs), cold-responsive proteins (CRPs) and transcription factors (TFs). The differential expression levels of the master genes were confirmed by qRT-PCR and almost consistent with their Reads Per kb per Million (RPKM) values. This physiological and transcriptomic analyses provided insight into the regulation mechanisms of low temperature enhancing Hyp biosynthesis in H. perforatum.

Diallyl trisulfide (DATS), a volatile natural sulfur-containing compound derived from garlic, possesses antifungal and preservative potential. However, its biocontrol efficacy against postharvest gray mold of tomato and the molecular mechanisms underlying fruit quality maintenance remain unclear. In this study, we systematically investigated the inhibitory effect of DATS fumigation on postharvest gray mold, its role in fruit quality maintenance, and the associated molecular mechanisms through in vitro antifungal assays, physiological and biochemical measurements, transcriptome sequencing, and correlation analysis. In vitro experiments showed that DATS at 50 μL L⁻¹ completely inhibited spore germination and germ tube elongation of Botrytis cinerea in a concentration-dependent manner, and disrupted spore membrane integrity (FDA-positive spores dropped from 73.4% to 2.9% at 50 μL L⁻¹). In vivo experiments demonstrated that Bc + DATS treatment completely inhibited lesion development compared to the control Bc, enhanced the activities of superoxide dismutase, catalase and peroxidase (e.g., CAT activity 2.20-fold higher than Bc on day 3), decreased malondialdehyde accumulation (0.65-fold of Bc on day 4), and delayed the declines in total soluble solids, titratable acidity, soluble sugars and vitamin C content (VC content 4.14-fold higher than Bc on day 4). Transcriptomic analysis revealed that DATS treatment up-regulated genes involved in plant hormone signal transduction, ubiquitin-mediated proteolysis, and phenylalanine metabolism, while down-regulating core MAPK kinases and histidine decarboxylase. Correlation analysis demonstrated significant associations between the expression of these pathway genes and antioxidant enzyme activities, vitamin C content, and lesion diameter. Collectively, DATS achieves effective control of postharvest gray mold and maintenance of fruit quality in tomato through direct antifungal activity, synergistic activation of hormone/MAPK signaling, reprogramming of phenylalanine metabolism, and modulation of membrane lipid homeostasis. This study provides a theoretical and practical basis for developing DATS as a green postharvest preservative to reduce food loss and ensure food safety.