Yasir Arafat

Yasir Arafat

orcid

Research Focus & Metrics

Academic Career Length

10Years (2017-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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LALiaqat Ali
Liaqat Ali
MUMohsan Ullah
Mohsan Ullah
YAYasir Arafat
Yasir Arafat
MAMuhammad Ajmal
Muhammad Ajmal
JCJi-Long Chen
Ji-Long Chen
DYDaojin Yu
Daojin Yu
Quorum-sensing systems control major virulence determinants in Enterococcus faecalis, which causes nosocomial infections. The E. faecalis quorum-sensing systems include several virulence factors that are regulated by the cytolysin operon, which encodes the cytolysin toxin. In addition, the E. faecalis Fsr regulator system controls the expression of gelatinase, serine protease, and enterocin O16. The cytolysin and Fsr virulence factor systems are linked to enterococcal diseases that affect the health of humans and other host models. Therefore, there is substantial interest in understanding and targeting these regulatory pathways to develop novel therapies for enterococcal infection control. Quorum-sensing inhibitors could be potential therapeutic agents for attenuating the pathogenic effects of E. faecalis. Here, we discuss the regulation of cytolysin, the LuxS system, and the Fsr system, their role in E. faecalis-mediated infections, and possible therapeutic approaches to prevent E. faecalis infection.

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QLQisong Li
Qisong Li
JCJun Chen
Jun Chen
LWLinkun Wu
Linkun Wu
XLXiaomian Luo
Xiaomian Luo
NLNa Li
Na Li
WLWenxiong Lin
Wenxiong Lin
Intercropping has been widely used to control disease and improve yield in agriculture. In this study, maize and peanut were used for non-separation intercropping (NS), semi-separation intercropping (SS) using a nylon net, and complete separation intercropping (CS) using a plastic sheet. In field experiments, two-year land equivalent ratios (LERs) showed yield advantages due to belowground interactions when using NS and SS patterns as compared to monoculture. In contrast, intercropping without belowground interactions (CS) showed a yield disadvantage. Meanwhile, in pot experiments, belowground interactions (found in NS and SS) improved levels of soil-available nutrients (nitrogen (N) and phosphorus (P)) and enzymes (urease and acid phosphomonoesterase) as compared to intercropping without belowground interactions (CS). Soil bacterial community assay showed that soil bacterial communities in the NS and SS crops clustered together and were considerably different from the CS crops. The diversity of bacterial communities was significantly improved in soils with NS and SS. The abundance of beneficial bacteria, which have the functions of P-solubilization, pathogen suppression, and N-cycling, was improved in maize and peanut soils due to belowground interactions through intercropping. Among these bacteria, numbers of Bacillus, Brevibacillus brevis, and Paenibacillus were mainly increased in the maize rhizosphere. Burkholderia, Pseudomonas, and Rhizobium were mainly increased in the peanut rhizosphere. In conclusion, using maize and peanut intercropping, belowground interactions increased the numbers of beneficial bacteria in the soil and improved the diversity of the bacterial community, which was conducive to improving soil nutrient (N and P) supply capacity and soil microecosystem stability.

28 May 2020 in Frontiers in Plant Science
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YAYasir Arafat
Yasir Arafat
IDIsrar Ud Din
Israr Ud Din
MTMuhammad Tayyab
Muhammad Tayyab
YJYuhang Jiang
Yuhang Jiang
TCTing Chen
Ting Chen
SLSheng Lin
Sheng Lin
In conventional tea plantations, a large amount of pruned material returns to the soil surface, putting a high quantity of polyphenols into the soil. The accumulation of active allelochemicals in the tea rhizosphere and subsequent shift in beneficial microbes may be the cause of acidification, soil sickness, and regeneration problem, which may be attributed to hindrance of plant growth, development, and low yield in long-term monoculture tea plantation. However, the role of pruning leaf litter in soil sickness under consecutive tea monoculture is unclear. Here, we investigated soil samples taken from conventional tea gardens of different ages (2, 15, and 30 years) and under the effect of regular pruning. Different approaches including liquid chromatography–mass spectrometry (LC-MS) analysis of the leaf litter, metagenomic study of root-associated bacterial communities, and in vitro interaction of polyphenols with selected bacteria were applied to understand the effect of leaf litter-derived polyphenols on the composition and structure of the tea rhizosphere microbial community. Our results indicated that each pruning practice returns a large amount of leaf litter to each tea garden. LC-MS results showed that leaf litter leads to the accumulation of various allelochemicals in the tea rhizosphere, including epigallocatechin gallate, epigallocatechin, epicatechin gallate, catechin, and epicatechin with increasing age of the tea plantation. Meanwhile, in the tea garden grown consecutively for 30 years (30-Y), the phenol oxidase and peroxidase activities increased significantly. Pyrosequencing identified Burkholderia and Pseudomonas as the dominant genera, while plant growth-promoting bacteria, especially Bacillus, Prevotella, and Sphingomonas, were significantly reduced in the long-term tea plantation. The qPCR results of 30-Y soil confirmed that the copy numbers of bacterial genes per gram of the rhizosphere soil were significantly reduced, while that of Pseudomonas increased significantly. In vitro study showed that the growth of catechin-degrading bacteria (e.g., Pseudomonas) increased and plant-promoting bacteria (e.g., Bacillus) decreased significantly with increasing concentration of these allelochemicals. Furthermore, in vitro interaction showed a 0.36-fold decrease in the pH of the broth after 72 h with the catechin degradation. In summary, the increase of Pseudomonas and Burkholderia in the 30-Y garden was found to be associated with the accumulation of catechin substrates. In response to the long-term monoculture of tea, the variable soil pH along with the litter distribution negatively affect the population of plant growth-promoting bacteria (e.g., Sphingomonas, Bacillus, and Prevotella). Current research suggests that the removal of pruned branches from tea gardens can prevent soil sickness and may lead to sustainable tea production.

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YAYasir Arafat
Yasir Arafat
XWXiaoya Wei
Xiaoya Wei
YJYuhang Jiang
Yuhang Jiang
TCTing Chen
Ting Chen
HSHafiz Sohaib Ahmed Saqib
Hafiz Sohaib Ahmed Saqib
WLWenxiong Lin
Wenxiong Lin
Positive plant–soil feedback depends on beneficial interactions between roots and microbes for nutrient acquisition; growth promotion; and disease suppression. Recent pyrosequencing approaches have provided insight into the rhizosphere bacterial communities in various cropping systems. However; there is a scarcity of information about the influence of root exudates on the composition of root-associated bacterial communities in ratooning tea monocropping systems of different ages. In Southeastern China; tea cropping systems provide the unique natural experimental environment to compare the distribution of bacterial communities in different rhizo-compartments. High performance liquid chromatography–electrospray ionization–mass spectrometry (HPLC–ESI–MS) was performed to identify and quantify the allelochemicals in root exudates. A high-throughput sequence was used to determine the structural dynamics of the root-associated bacterial communities. Although soil physiochemical properties showed no significant differences in nutrients; long-term tea cultivation resulted in the accumulation of catechin-containing compounds in the rhizosphere and a lowering of pH. Moreover; distinct distribution patterns of bacterial taxa were observed in all three rhizo-compartments of two-year and 30-year monoculture tea; mediated strongly by soil pH and catechin-containing compounds. These results will help to explore the reasons why soil quality and fertility are disturbed in continuous ratooning tea monocropping systems; and to clarify the associated problems.

19 August 2019 in Agronomy
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YAYasir Arafat
Yasir Arafat
MTMuhammad Tayyab
Muhammad Tayyab
MKMuhammad Umar Khan
Muhammad Umar Khan
TCTing Chen
Ting Chen
HAHira Amjad
Hira Amjad
SLSheng Lin
Sheng Lin
Continuous cropping frequently leads to soil acidification and major soil-borne diseases in tea plants, resulting in low tea yield. We have limited knowledge about the effects of continuous tea monoculture on soil properties and the fungal community. Here, we selected three replanted tea fields with 2, 15, and 30 years of monoculture history to assess the influence of continuous cropping on fungal communities and soil physiochemical attributes. The results showed that continuous tea monoculture significantly reduced soil pH and tea yield. Alpha diversity analysis showed that species richness declined significantly as the tea planting years increased and the results based on diversity indicated inconsistency. Principal coordinate analysis (PCoA) revealed that monoculture duration had the highest loading in structuring fungal communities. The relative abundance of Ascomycota, Glomeromycota, and Chytridiomycota decreased and Zygomycota and Basidiomycota increased with increasing cropping time. Continuous tea cropping not only decreased some beneficial fungal species such as Mortierella alpina and Mortierella elongatula, but also promoted potentially pathogenic fungal species such as Fusarium oxysporum, Fusarium solani, and Microidium phyllanthi over time. Overall, continuous tea cropping decreased soil pH and potentially beneficial microbes and increased soil pathogenic microbes, which could be the reason for reducing tea yield. Thus, developing sustainable tea farming to improve soil pH, microbial activity, and enhanced beneficial soil microbes under a continuous cropping system is vital for tea production.

11 September 2023 in Agronomy
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SXShan Zi xiang
Shan Zi xiang
SZShixing Zhou
Shixing Zhou
ASAsma Shah
Asma Shah
YAYasir Arafat
Yasir Arafat
SRSyed Arif Hussain Rizvi
Syed Arif Hussain Rizvi
HSHua Shao
Hua Shao
The allelopathy definition accepted by the International Allelopathy Society is any process or phenomenon via which organisms such as plants, microorganism, viruses, and fungi release specific metabolites, known as allelochemicals, into the environment that affect the growth and development of other surrounding plants, resulting in mutual inhibition or promotion of the organisms. Allelopathy in donor plants is either self-induced or induced by specific external biotic and abiotic factors. The external factors may determine the types and quantities of allelochemicals released into the environment by a donor plants. Biotic factors inducing allelopathy include plant competition, herbivory by animals and insects, and soil-borne pathogens. For example, competing plants produce allelochemicals in response to competing weeds. Plants may emit signaling chemicals from their roots to induce the production of protective metabolites against organisms, herbivores, or competitors. Additionally, herbivory is a selection pressure that triggers defensive measures in plants, such as the synthesis of allelochemicals in response to injury. Moreover, some leaves release volatile substances that help the plant to deter or attract herbivores or pests that attack leaves. Likewise, root compounds may be produced in response to soil-borne pathogens. Furthermore, some abiotic factors, including light, temperature, drought, CO2, and nutrient deficiency, can also induce plants to release allelochemicals. Therefore, it is pertinent to understand this natural phenomenon in plants and how external factors lead plants to exert allelopathy to compete, defend themselves, and survive in a challenging environment.