Herein, we evaluate the scientific basis for managing hull fouling of ships entering Korean ports, diagnose biological risks that may occur when in-water cleaning (IWC) systems remove hull fouling, and present a protocol for evaluating these risks (the Korean Infection Modes and Effects Analysis; K-IMEA). Protocol development included the selection of core elements and scenario design for IWC and the evaluation of regrowth experiments. The K-IMEA index was designed by considering the inoculation pathway of attaching organisms in all processes to ships that enter a port for in-water cleaning. A number of risk indices were defined: R1—Introduction/Establishment of alien species before in-water cleaning; R2—Establishment of alien species escaped during in-water cleaning; R3—Introduction/Establishment of alien species after in-water cleaning; and R4—Establishment of alien species in effluent water. K-IMEA regrowth experiments (R2 and R4) using the in-water cleaning effluent showed that the attachment and regrowth of prokaryotes, microalgae, and macroalgae were successfully detected. In particular, prokaryotes were observed in samples filtered through a 5 μm mesh of the in-water cleaning effluent, even at a low fouling rating (Levels 1–2). These experiments suggest a necessity to consider a secondary treatment method in addition to the primary filtration method for the treatment of in-water cleaning effluents.

Active substance-based Ballast Water Management Systems (BWMS) can generate disinfection by-products (DBPs) by reacting with dissolved organic matter (DOM). However, current IMO G9-based assessments often overlook qualitative DOM variations. This study investigated DBP formation following NaDCC treatment in natural seawater dominated by the diatom Skeletonema costatum and the dinoflagellate Akashiwo sanguinea. Laboratory-cultured DOM was also analyzed using ATR-FT-IR, PCA, and 2D-COS to evaluate structural differences. In field experiments, S. costatum treatment primarily produced brominated trihalomethanes (THMs) and specific haloacetic acids (HAAs) with a limited composition. Conversely, A. sanguinea treatment yielded a diverse range of DBPs, including nitrogenous DBPs (HANs). FT-IR results, supported by 2D-COS, revealed that A. sanguinea-derived DOM underwent non-monotonic structural changes and distinct sequential functional group reactions, suggesting multiple, time-delayed precursor interactions. These findings demonstrate that phytoplankton species-specific DOM composition significantly dictates DBP profiles and temporal dynamics. Therefore, environmental risk assessments for BWMS must incorporate the qualitative characteristics of biogenic DOM and dominant species traits, particularly during coastal bloom events, to ensure more accurate management strategies.