The root system plays an important role in the growth and development of cotton, and root growth is closely related to shoot growth, both of which are affected by N availability in the soil. However, it is unknown how N affects root growth and the root–shoot relationship under various N rates in the Yellow River Basin, China. Thus, the aim of this study was to assess the impacts of the application rate of N on root growth and the root–shoot relationship, to provide insight into the N regulation of root and shoot growth and N efficiency from the perspective of the root system. A field experiment conducted in 2014 and 2015 was used to determine the effects of N rates (0, 120, 240, and 480 kg ha^–1) on root morphology, root distribution, the root–shoot relationship, and cotton yield. A moderate N fertilization rate (240 kg ha^–1) increased root length, root surface area, and root biomass in most soil layers and significantly increased total root growth and total root biomass by more than 36.06% compared to the 0 kg ha^–1 treatment. In addition, roots in the surface soil layers were more strongly affected by N fertilization than roots distributed in the deeper soil layers. Total root length, total root surface area, and root biomass in the 0–15 cm layer were significantly correlated with shoot biomass and boll biomass. In the 60–75 cm layer, total root length, total root surface area, and root length were significantly positively correlated with seed cotton yield. The application of a moderate level of N markedly increased total shoot biomass, boll biomass, and seed cotton yield. Our results show that increased shoot and boll biomasses were correlated with a significant increase in the root system especially the shallow roots in the moderate N treatment (240 kg ha^–1), leading to an increase in cotton seed yield.

Gossypium hirsutum L., is a widely cultivated cotton species around the world, but its production is seriously threatened by its susceptibility to chilling stress. Low temperature affects its germination, and the underlying molecular mechanisms are rarely known, particularly from a transcriptional perspective. In this study, transcriptomic profiles were analyzed and compared between two cotton varieties, the cold-tolerant variety KN27-3 and susceptible variety XLZ38. A total of 7535 differentially expressed genes (DEGs) were identified. Among them, the transcripts involved in energy metabolism were significantly enriched during germination based on analysis of Kyoto Encyclopedia of Genes and Genomes (KEGG) pathways, such as glycolysis/gluconeogenesis, tricarboxylic acid cycle (TCA cycle), and glyoxylate cycle (GAC). Results from further GO enrichment analysis show the earlier appearance of DNA integration, meristem growth, cotyledon morphogenesis, and other biological processes in KN27-3 compared with XLZ38 under chilling conditions. The synthesis of asparagine, GDP-mannose, and trehalose and the catabolic process of raffinose were activated. DEGs encoding antioxidants (spermidine) and antioxidase (CAT1, GPX4, DHAR2, and APX1) were much more up-regulated in embryos of KN27-3. The content of auxin (IAA), cis-zeatin riboside (cZR), and trans-zeatin riboside (tZR) in KN27-3 are higher than that in XLZ38 at five stages (from 12 h to 54 h). GA3 was expressed at a higher level in KN27-3 from 18 h to 54 h post imbibition compared to that in XLZ38. And abscisic acid (ABA) content of KN27-3 is lower than that in XLZ38 at five stages. Results from hormone content measurements and the related gene expression analysis indicated that IAA, CTK, and GA3 may promote germination of the cold-tolerant variety, while ABA inhibits it. These results expand the understanding of cottonseed germination and physiological regulations under chilling conditions by multiple pathways.

The objective of this study was to assess the impacts of nitrogen on the physiological characteristics of the source–sink system of upper fruiting branches under various amounts of nitrogen fertilization. A two-year field experiment was conducted with a Bt cotton cultivar in the Yellow River Basin of China. The growth and yield of cotton of the upper fruiting branches were compared under four nitrogen levels: Control (N0, 0 kg ha⁻¹), low nitrogen (N1, 120 kg ha⁻¹), moderate nitrogen (N2, 240 kg ha⁻¹), and high nitrogen (N3, 480 kg ha⁻¹). The results indicated that in the subtending leaves in upper fruiting branches, chlorophyll content, protein content, and peroxidase (POD) activity dramatically increased with nitrogen application, reaching the highest under the moderate nitrogen treatment. The physiological characters in the seeds had the same trends as in the subtending leaves. Furthermore, the moderate nitrogen rate (240 kg ha⁻¹) had a favorable yield and quality. Our results supported that a moderate nitrogen rate (240 kg ha⁻¹) could coordinate the source–sink growth of cotton in the late stage, enhance the yield and fiber quality, and decrease the cost of fertilizer in the Yellow River Basin of China and other similar ecological areas.

(1) Background: Upland cotton (Gossypium hirsutum L.) is the most important natural fiber worldwide, and it is extensively planted and plentifully used in the textile industry. Major cotton planting regions are frequently affected by abiotic stress, especially drought stress. Drought resistance is a complex, quantitative trait. A genome-wide association study (GWAS) constitutes an efficient method for dissecting the genetic architecture of complex traits. In this study, the drought resistance of a population of 316 upland cotton accessions was studied via GWAS. (2) Methods: GWAS methodology was employed to identify relationships between molecular markers or candidate genes and phenotypes of interest. (3) Results: A total of 8, 3, and 6 SNPs were associated with the euphylla wilting score (EWS), cotyledon wilting score (CWS), and leaf temperature (LT), respectively, based on a general linear model and a factored spectrally transformed linear mixed model. For these traits, 7 QTLs were found, of which 2 each were located on chromosomes A05, A11, and D03, and of which 1 was located on chromosome A01. Importantly, in the candidate regions WRKY70, GhCIPK6, SnRK2.6, and NET1A, which are involved in the response to abscisic acid (ABA), the mitogen-activated protein kinase (MAPK) signaling pathway and the calcium transduction pathway were identified in upland cotton at the seedling stage under drought stress according to annotation information and linkage disequilibrium (LD) block analysis. Moreover, RNA sequencing analysis showed that WRKY70, GhCIPK6, SnRK2.6, and NET1A were induced by drought stress, and the expression of these genes was significantly different between normal and drought stress conditions. (4) Conclusions: The present study should provide some genomic resources for drought resistance in upland cotton. Moreover, the germplasm of the different phenotypes, the detected SNPs and, the potential candidate genes will be helpful for molecular marker-assisted breeding studies about increased drought resistance in upland cotton.

Cotton root growth can be affected by different nitrogen fertilizer rates. The objective of the present study was to quantify the effects of nitrogen fertilization rate on cotton root growth and distribution using minirhizotron and soil coring methods. A secondary objective was to evaluate the minirhizotron method as a tool for determining nitrogen application rates using the root distribution as an index. This study was conducted on a Bt cotton cultivar (Jimian 958) under four nitrogen fertilization rates, i.e., 0, 120, 240 and 480 kg ha^-1 (control, low, moderate and high levels, respectively), in the Yellow River basin of China from 2013–2015. The sampling process, details of each method as well as the root morphology and root distribution were measured. The operational processes, time and labor needed for the soil core method were all greater than those for the minirhizotron method. The total root length density and the length density in most soil layers, especially in the upper soil layers, first increased but then decreased as nitrogen fertilization increased, and the same trend was observed for both methods. Compared with N0, the total root length density under moderate nitrogen fertilization by the soil coring method increased by more than 94.82%, in 2014 and 61.11% in 2015; while by the minirhizotron method the corresponding values were 28.24% in 2014 and 57.47%, in 2015. Most roots were distributed in the shallow soil layers (0–60 cm) in each method. However, the root distribution with the soil coring method (>73.11%) was greater than that with the minirhizotron method (>47.07%). The correlations between the root morphology indexes of shallow soil depth measured using the two methods were generally significant, with correlative coefficients greater than 0.334. We concluded that the minirhizotron method could be used for cotton root analysis and most cotton roots distributed in upper soil layers (0-60cm). In addition, a moderate nitrogen rate (240 kg ha^-1) could increase root growth, especially in the shallow soil layers. The differences observed with the minirhizotron method were clearer than those observed with the soil coring method.