Long-term irrational fertilizer inputs affect soil nutrients conditions in the agro-pastoral ecotone of North China. However, the mechanisms by which biotic and abiotic factors are affected by different fertilizer types remain unclear. A 16-year, long-term fertilization experiment was conducted to explore how soil physicochemical properties and microbial communities respond to different fertilizer types at an experimental site in North China. The key environmental factors that drove changes in soil microbial communities were also determined. In September 2019, soils were collected from plots of four fertilizer treatments: 1) non-fertilization control (CK), 2) chemical fertilization only (CF), 3) organic manure fertilization only (M), and 4) chemical fertilization plus organic manure (CFM). Compared with CK, soil organic matter, total nitrogen, available nitrogen, available phosphorus, and available potassium contents were higher in M and CFM, whereas soil pH was significantly lower in CF. Abundances of dominant soil bacterial phyla Proteobacteria, Bacteroidetes, and Gemmatimonadetes were higher in M and CFM than CK. Abundances of dominant soil fungal phyla Ascomycota was lower in CFM than in other treatments. The pathogenic fungiFusarium,Paramyrothecium,Cladosporium, andAlternariahad the highest abundances in CK and CF, whereas abundances of the beneficial fungiMortierellawere significantly higher in M and CFM than in CF and CK. According to partial least squares path modeling, differences in fertilizer types had direct positive effects on fungal communities but little effect on bacterial communities. Overall, CFM maintained higher soil fertility and a healthy ecosystem because it increased beneficial microorganisms and inhibited pathogenic microorganisms, whereas CF increased the risk of crop infection with soil-borne diseases. The study provided a better understanding of how long-term fertilization affects microbial community composition and their associated ecosystem functions.

Soil microorganisms are important components of soil ecosystems, and their diversity plays an important role in maintaining their functional stability. Organic fertilizer is an important measure for improving soil fertility in agronomic practice. The effects of organic fertilizer on soil microbial diversity and community structure are different with different degrees of maturation. In this study, uncomposted organic fertilizer (R), high-temperature organic fertilizer (H), cooling organic fertilizer (C), and decomposed organic fertilizer (D) were applied, and the 16S rRNA gene sequences of bacteria in soil were analyzed via high-throughput sequencing technology to understand the effects of organic fertilizer with different degrees of maturation on bacterial diversity and community structure in saline soil. Compared with no fertilization, the uncomposted organic fertilizer, high-temperature organic fertilizer, and decomposed organic fertilizer treatments significantly reduced soil bacterial diversity: the decomposed organic fertilizer treatment significantly reduced soil bacterial richness, the cooling organic fertilizer treatment had no significant effect on soil bacterial diversity and bacterial richness, Proteobacteria representing soil nutrients significantly increased under the cooling organic fertilizer treatment, and the relative abundance of Firmicutes significantly decreased. These four organic fertilizers, with different degrees of maturation, significantly increased the beneficial bacterium Bacillus and nitrile-based degrading bacteria but also significantly increased the potential pathogenicity of the soil, and there was no significant difference between the four treatments. In addition, during a cooling period, the organic fertilizer treatment helped to increase the population of oxidative-stress-tolerant bacteria. The application of organic fertilizer during a cooling period to saline–alkali soil is more helpful in improving its nutrient levels.

Intensive monoculture exacerbates soil compaction and sodification in the West Liao River Plain. This study evaluated legacy effects of diversified 3-year rotations on sodic soil health (ESP > 15%, ECe < 4 dS m⁻¹) during two subsequent maize seasons. Rotations incorporating salt-tolerant forages and deep-rooted crops (sugar beet–Echinochloa–sorghum and Echinochloa–tall fescue–silage corn) significantly reduced bulk density (8.6–13.1%) and exchangeable sodium percentage (up to 14.1 percentage points) relative to continuous monoculture. Treatments with maximum desalination (22.6% reduction) enhanced fungal α-diversity by 98.0%, while forage-dominated systems enriched Acidobacteriota by 35.2%, shifting bacterial communities toward oligotrophic dominance. Structural equation modeling confirmed that rotation effects on enzyme activity were mediated through reduced bulk density and ESP. These systems provide effective biological models for sustainable maize cultivation in sodic soils via synergistic physical-chemical-biological amelioration.