Yaoqin XIE

Prof. Dr. Yaoqin XIE

orcid

Research Focus & Metrics

Academic Career Length

16Years (2011-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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1 June 2020 in Quantitative Imaging in Medicine and Surgery
Verified
Journal Article
Open access
PDF file
WLWen Li
Wen Li
YLYafen Li
Yafen Li
WQWenjian Qin
Wenjian Qin
XLXiaokun Liang
Xiaokun Liang
JXJianyang Xu
Jianyang Xu
Yaoqin XIEYaoqin XIE
Yaoqin XIE
Background: Precise patient setup is critical in radiation therapy. Medical imaging plays an essential role in patient setup. As compared to computed tomography (CT) images, magnetic resonance image (MRI) has high contrast for soft tissues, which becomes a promising imaging modality during treatment. In this paper, we proposed a method to synthesize brain MRI images from corresponding planning CT (pCT) images. The synthetic MRI (sMRI) images can be used to align with positioning MRI (pMRI) equipped by an MRI-guided accelerator to account for the disadvantages of multi-modality image registration. Methods: Several deep learning network models were applied to implement this brain MRI synthesis task, including CycleGAN, Pix2Pix model, and U-Net. We evaluated these methods using several metrics, including mean absolute error (MAE), mean squared error (MSE), structural similarity index (SSIM), and peak signal-to-noise ratio (PSNR). Results: In our experiments, U-Net with L1+L2 loss achieved the best results with the lowest overall average MAE of 74.19 and MSE of 1.035*104, respectively, and produced the highest SSIM of 0.9440 and PSNR of 32.44. Conclusions: Quantitative comparisons suggest that the performance of U-Net, a supervised deep learning method, is better than the performance of CycleGAN, a typical unsupervised method, in our brain MRI synthesis procedure. The proposed method can convert pCT/pMRI multi-modality registration into mono-modality registration, which can be used to reduce registration error and achieve a more accurate patient setup.

25 March 2019 in Computational and Mathematical Methods in Medicine
Verified
Journal Article
Open access
PDF file
LZLian Zou
Lian Zou
Shaode YuShaode Yu
Shaode Yu
TMTiebao Meng
Tiebao Meng
ZZZhicheng Zhang
Zhicheng Zhang
XLXiaokun Liang
Xiaokun Liang
Yaoqin XIEYaoqin XIE
Yaoqin XIE
This study reviews the technique of convolutional neural network (CNN) applied in a specific field of mammographic breast cancer diagnosis (MBCD). It aims to provide several clues on how to use CNN for related tasks. MBCD is a long-standing problem, and massive computer-aided diagnosis models have been proposed. The models of CNN-based MBCD can be broadly categorized into three groups. One is to design shallow or to modify existing models to decrease the time cost as well as the number of instances for training; another is to make the best use of a pretrained CNN by transfer learning and fine-tuning; the third is to take advantage of CNN models for feature extraction, and the differentiation of malignant lesions from benign ones is fulfilled by using machine learning classifiers. This study enrolls peer-reviewed journal publications and presents technical details and pros and cons of each model. Furthermore, the findings, challenges and limitations are summarized and some clues on the future work are also given. Conclusively, CNN-based MBCD is at its early stage, and there is still a long way ahead in achieving the ultimate goal of using deep learning tools to facilitate clinical practice. This review benefits scientific researchers, industrial engineers, and those who are devoted to intelligent cancer diagnosis.

6 June 2017 in Physics in Medicine & Biology
Verified
Journal Article
Open access
PDF file
XLXiaokun Liang
Xiaokun Liang
ZZZhicheng Zhang
Zhicheng Zhang
TNTianye Niu
Tianye Niu
Shaode YuShaode Yu
Shaode Yu
SWShibin Wu
Shibin Wu
Yaoqin XIEYaoqin XIE
Yaoqin XIE
Ring artifacts in cone beam computed tomography (CBCT) images are caused by pixel gain variations using flat-panel detectors, and may lead to structured non-uniformities and deterioration of image quality. The purpose of this study is to propose a method of general ring artifact removal in CBCT images. This method is based on the polar coordinate system, where the ring artifacts manifest as stripe artifacts. Using relative total variation, the CBCT images are first smoothed to generate template images with fewer image details and ring artifacts. By subtracting the template images from the CBCT images, residual images with image details and ring artifacts are generated. As the ring artifact manifests as a stripe artifact in a polar coordinate system, the artifact image can be extracted by mean value from the residual image; the image details are generated by subtracting the artifact image from the residual image. Finally, the image details are compensated to the template image to generate the corrected images. The proposed framework is iterated until the differences in the extracted ring artifacts are minimized. We use a 3D Shepp-Logan phantom, Catphan©504 phantom, uniform acrylic cylinder, and images from a head patient to evaluate the proposed method. In the experiments using simulated data, the spatial uniformity is increased by 1.68 times and the structural similarity index is increased from 87.12% to 95.50% using the proposed method. In the experiment using clinical data, our method shows high efficiency in ring artifact removal while preserving the image structure and detail. The iterative approach we propose for ring artifact removal in cone-beam CT is practical and attractive for CBCT guided radiation therapy.

1 October 2021 in Medical Image Analysis
Verified
Journal Article
Closed access
XLXiaokun Liang
Xiaokun Liang
NLNa Li
Na Li
ZZZhicheng Zhang
Zhicheng Zhang
JXJing Xiong
Jing Xiong
SZShoujun Zhou
Shoujun Zhou
Yaoqin XIEYaoqin XIE
Yaoqin XIE

9 January 2024 in IEEE Transactions on Medical Imaging
Verified
Journal Article
Closed access
XLXuan Liu
Xuan Liu
Yaoqin XIEYaoqin XIE
Yaoqin XIE
SDSonghui Diao
Songhui Diao
STShan Tan
Shan Tan
XLXiaokun Liang
Xiaokun Liang
During the process of computed tomography (CT), metallic implants often cause disruptive artifacts in the reconstructed images, impeding accurate diagnosis. Many supervised deep learning-based approaches have been proposed for metal artifact reduction (MAR). However, these methods heavily rely on training with paired simulated data, which are challenging to acquire. This limitation can lead to decreased performance when applying these methods in clinical practice. Existing unsupervised MAR methods, whether based on learning or not, typically work within a single domain, either in the image domain or the sinogram domain. In this paper, we propose an unsupervised MAR method based on the diffusion model, a generative model with a high capacity to represent data distributions. Specifically, we first train a diffusion model using CT images without metal artifacts. Subsequently, we iteratively introduce the diffusion priors in both the sinogram domain and image domain to restore the degraded portions caused by metal artifacts. Besides, we design temporally dynamic weight masks for the image-domian fusion. The dual-domain processing empowers our approach to outperform existing unsupervised MAR methods, including another MAR method based on diffusion model. The effectiveness has been qualitatively and quantitatively validated on synthetic datasets. Moreover, our method demonstrates superior visual results among both supervised and unsupervised methods on clinical datasets. Codes are available in github.com/DeepXuan/DuDoDp-MAR.

1 May 2017 in PLOS ONE
Verified
Journal Article
Open access
PDF file
Shaode YuShaode Yu
Shaode Yu
SWShibin Wu
Shibin Wu
LWLei Wang
Lei Wang
FJFan Jiang
Fan Jiang
Yaoqin XIEYaoqin XIE
Yaoqin XIE
LLLeida Li
Leida Li
Blind image quality assessment can be modeled as feature extraction followed by score prediction. It necessitates considerable expertise and efforts to handcraft features for optimal representation of perceptual image quality. This paper addresses blind image sharpness assessment by using a shallow convolutional neural network (CNN). The network takes single feature layer to unearth intrinsic features for image sharpness representation and utilizes multilayer perceptron (MLP) to rate image quality. Different from traditional methods, CNN integrates feature extraction and score prediction into an optimization procedure and retrieves features automatically from raw images. Moreover, its prediction performance can be enhanced by replacing MLP with general regression neural network (GRNN) and support vector regression (SVR). Experiments on Gaussian blur images from LIVE-II, CSIQ, TID2008 and TID2013 demonstrate that CNN features with SVR achieves the best overall performance, indicating high correlation with human subjective judgment.