Pramod K Avti

Dr. Pramod K Avti

orcid

Research Focus & Metrics

Academic Career Length

22Years (2005-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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1 January 2020 in Indian Journal of Pharmacology
Verified
Journal Article
Closed access
BMBikash Medhi
Bikash Medhi
MPManisha Prajapat
Manisha Prajapat
PSPhulen Sarma
Phulen Sarma
NSNishant Shekhar
Nishant Shekhar
PAPramod K Avti
Pramod K Avti
SBSeema Bansal
Seema Bansal
The 2019-novel coronavirus (nCoV) is a major source of disaster in the 21th century. However, the lack of specific drugs to prevent/treat an attack is a major need at this current point of time. In this regard, we conducted a systematic review to identify major druggable targets in coronavirus (CoV). We searched PubMed and RCSB database with keywords HCoV, NCoV, corona virus, SERS-CoV, MERS-CoV, 2019-nCoV, crystal structure, X-ray crystallography structure, NMR structure, target, and drug target till Feb 3, 2020. The search identified seven major targets (spike protein, envelop protein, membrane protein, protease, nucleocapsid protein, hemagglutinin esterase, and helicase) for which drug design can be considered. There are other 16 nonstructural proteins (NSPs), which can also be considered from the drug design perspective. The major structural proteins and NSPs may serve an important role from drug design perspectives. However, the occurrence of frequent recombination events is a major deterrent factor toward the development of CoV-specific vaccines/drugs.

18 May 2020 in Journal of Biomolecular Structure and Dynamics
Verified
Journal Article
Closed access
PSPhulen Sarma
Phulen Sarma
NSNishant Shekhar
Nishant Shekhar
MPManisha Prajapat
Manisha Prajapat
PAPramod K Avti
Pramod K Avti
HKHardeep Kaur
Hardeep Kaur
BMBikash Medhi
Bikash Medhi
The N terminal domain (NTD) of Nucleocapsid protein (N protein) of coronavirus (CoV) binds to the viral (+) sense RNA and results in CoV ribonucleoprotien (CoV RNP) complex, essential for the virus replication. In this study, the RNA-binding N terminal domain (NTD) of the N protein was targeted for the identification of possible inhibitors of RNA binding. Two NTD structures of N proteins were selected (2OFZ and 1SSK, 92% homology) for virtual screening of 56,079 compounds from Asinex and Maybridge library to identify top 15 hits for each of the targets based on “docking score”. These top-hits were further screened for MM-GBSA binding free energy, pharmacokinetic properties (QikProp) and drug-likeness (SwissADME) and subjected to molecular dynamics (MD) studies. Two suitable binders (ZINC00003118440 and ZINC0000146942) against the target 2OFZ were identified. ZINC00003118440 is a theophylline derivative under the drug class ‘bronchodilEtors’ and further screening with approved bronchodilators was also studied to identify their ability to bind to the RNA binding region on the N protein. The other identified top hit is ZINC0000146942, which is a 3,4dihydropyrimidone class molecule. Hence this study suggests two important class of compounds, theophylline and pyrimidone derivaties as possible inhibitors of RNA binding to the N terminal domain of N protein of coronavirus, thus opening new avenues for in vitro validations.

3 May 2020 in Journal of Medical Virology
Verified
Journal Article
Open access
PDF file
PSPhulen Sarma
Phulen Sarma
HKHardeep Kaur
Hardeep Kaur
HKHarish Kumar
Harish Kumar
DMDhruv Mahendru
Dhruv Mahendru
PAPramod K Avti
Pramod K Avti
BMBikash Medhi
Bikash Medhi
Following the demonstration of the efficacy of hydroxychloroquine against severe acute respiratory syndrome coronavirus 2 in vitro, many trials started to evaluate its efficacy in clinical settings. However, no systematic review and meta‐analysis have addressed the issue of the safety and efficacy of hydroxychloroquine (HCQ) in coronavirus disease 2019. We conducted a systematic review and meta‐analysis with the objectives of evaluation of safety and efficacy of HCQ alone or in combination in terms of “time to clinical cure,” “virological cure,” “death or clinical worsening of disease,” “radiological progression,” and safety. RevMan was used for meta‐analysis. We searched 16 literature databases out of which seven studies (n = 1358) were included in the systematic review. In terms of clinical cure, two studies reported possible benefit in “time to body temperature normalization” and one study reported less “cough days” in the HCQ arm. Treatment with HCQ resulted in less number of cases showing the radiological progression of lung disease (odds ratio [OR], 0.31, 95% confidence interval [CI], 0.11‐0.9). No difference was observed in virological cure (OR, 2.37, 95% CI, 0.13‐44.53), death or clinical worsening of disease (OR, 1.37, 95% CI, 1.37‐21.97), and safety (OR, 2.19, 95% CI, 0.59‐8.18), when compared with the control/conventional treatment. Five studies reported either the safety or efficacy of HCQ + azithromycin. Although seems safe and effective, more data are required for a definitive conclusion. HCQ seems to be promising in terms of less number of cases with radiological progression with a comparable safety profile to control/conventional treatment. We need more data to come to a definite conclusion.

18 February 2010 in IEEE Transactions on Biomedical Engineering
Verified
Journal Article
Closed access
AMAlireza Mashal
Alireza Mashal
BSBalaji Sitharaman
Balaji Sitharaman
XLXu Li
Xu Li
PAPramod K Avti
Pramod K Avti
ASAlan V. Sahakian
Alan V. Sahakian
SHSusan C. Hagness
Susan C. Hagness
The experimental results reported in this paper suggest that single-walled carbon nanotubes (SWCNTs) have the potential to enhance dielectric contrast between malignant and normal tissue for microwave detection of breast cancer and facilitate selective heating of malignant tissue for microwave hyperthermia treatment of breast cancer. In this study, we constructed tissue-mimicking materials with varying concentrations of SWCNTs and characterized their dielectric properties and heating response. At SWCNT concentrations of less than 0.5% by weight, we observed significant increases in the relative permittivity and effective conductivity. In microwave heating experiments, we observed significantly greater temperature increases in mixtures containing SWCNTs. These temperature increases scaled linearly with the effective conductivity of the mixtures. This work is a first step towards the development of functionalized, tumor-targeting SWCNTs as theranostic (integrated therapeutic and diagnostic) agents for microwave breast cancer detection and treatment.

29 May 2018 in Scientific Reports
Verified
Journal Article
Open access
PDF file
MMMohammad Moeini
Mohammad Moeini
XLXuecong Lu
Xuecong Lu
PAPramod K Avti
Pramod K Avti
RDRafat Damseh
Rafat Damseh
SBSamuel Bélanger
Samuel Bélanger
FLFrédéric Lesage
Frédéric Lesage
Despite the possible role of impaired cerebral tissue oxygenation in age-related cognition decline, much is still unknown about the changes in brain tissue pO2 with age. Using a detailed investigation of the age-related changes in cerebral tissue oxygenation in the barrel cortex of healthy, awake aged mice, we demonstrate decreased arteriolar and tissue pO2 with age. These changes are exacerbated after middle-age. We further uncovered evidence of the presence of hypoxic micro-pockets in the cortex of awake old mice. Our data suggests that from young to middle-age, a well-regulated capillary oxygen supply maintains the oxygen availability in cerebral tissue, despite decreased tissue pO2 next to arterioles. After middle-age, due to decreased hematocrit, reduced capillary density and higher capillary transit time heterogeneity, the capillary network fails to compensate for larger decreases in arterial pO2. The substantial decrease in brain tissue pO2, and the presence of hypoxic micro-pockets after middle-age are of significant importance, as these factors may be related to cognitive decline in elderly people.

1 February 2006 in Biochimica et Biophysica Acta (BBA) - General Subjects
Verified
Journal Article
Closed access
KKKrishan Lal Khanduja
Krishan Lal Khanduja
PAPramod K Avti
Pramod K Avti
SKSurender Kumar
Surender Kumar
NMNidhi Mittal
Nidhi Mittal
KSKiranjit Kaur Sohi
Kiranjit Kaur Sohi
CPChander Mohan Pathak
Chander Mohan Pathak