Ruth Caroline Lovering

Prof. Ruth Caroline Lovering

Institute of Cardiovascular Science, University College London, London, City of London, UK
orcid

Research Focus & Metrics

Academic Career Length

41Years (1986-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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3 March 2023 in Genetics
Verified
Journal Article
Open access
PDF file
TCThe Gene Ontology Consortium
The Gene Ontology Consortium
SASuzi A Aleksander
Suzi A Aleksander
JBJames Balhoff
James Balhoff
SCSeth Carbon
Seth Carbon
JCJ Michael Cherry
J Michael Cherry
MWMonte Westerfield
Monte Westerfield
The Gene Ontology (GO) knowledgebase (http://geneontology.org) is a comprehensive resource concerning the functions of genes and gene products (proteins and noncoding RNAs). GO annotations cover genes from organisms across the tree of life as well as viruses, though most gene function knowledge currently derives from experiments carried out in a relatively small number of model organisms. Here, we provide an updated overview of the GO knowledgebase, as well as the efforts of the broad, international consortium of scientists that develops, maintains, and updates the GO knowledgebase. The GO knowledgebase consists of three components: (1) the GO—a computational knowledge structure describing the functional characteristics of genes; (2) GO annotations—evidence-supported statements asserting that a specific gene product has a particular functional characteristic; and (3) GO Causal Activity Models (GO-CAMs)—mechanistic models of molecular “pathways” (GO biological processes) created by linking multiple GO annotations using defined relations. Each of these components is continually expanded, revised, and updated in response to newly published discoveries and receives extensive QA checks, reviews, and user feedback. For each of these components, we provide a description of the current contents, recent developments to keep the knowledgebase up to date with new discoveries, and guidance on how users can best make use of the data that we provide. We conclude with future directions for the project.

1 December 2019 in The Lancet Neurology
Verified
Journal Article
Closed access
MNMike A Nalls
Mike A Nalls
CBCornelis Blauwendraat
Cornelis Blauwendraat
KHKarl Heilbron
Karl Heilbron
SBSara Bandres-Ciga
Sara Bandres-Ciga
DCDiana Chang
Diana Chang
FZFutao Zhang
Futao Zhang

13 November 2013 in Nucleic Acids Research
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Journal Article
Open access
PDF file
SOSandra Orchard
Sandra Orchard
MAMais Ammari
Mais Ammari
BABruno Aranda
Bruno Aranda
LBLionel Breuza
Lionel Breuza
LBLeonardo Briganti
Leonardo Briganti
HHHenning Hermjakob
Henning Hermjakob
IntAct (freely available at http://www.ebi.ac.uk/intact) is an open-source, open data molecular interaction database populated by data either curated from the literature or from direct data depositions. IntAct has developed a sophisticated web-based curation tool, capable of supporting both IMEx- and MIMIx-level curation. This tool is now utilized by multiple additional curation teams, all of whom annotate data directly into the IntAct database. Members of the IntAct team supply appropriate levels of training, perform quality control on entries and take responsibility for long-term data maintenance. Recently, the MINT and IntAct databases decided to merge their separate efforts to make optimal use of limited developer resources and maximize the curation output. All data manually curated by the MINT curators have been moved into the IntAct database at EMBL-EBI and are merged with the existing IntAct dataset. Both IntAct and MINT are active contributors to the IMEx consortium (http://www.imexconsortium.org).

1 July 2019 in Neuron
Verified
Journal Article
Closed access
FKFrank Koopmans
Frank Koopmans
PNPim van Nierop
Pim van Nierop
MAMaria Andres-Alonso
Maria Andres-Alonso
ABAndrea Byrnes
Andrea Byrnes
TCTony Cijsouw
Tony Cijsouw
MVMatthijs Verhage
Matthijs Verhage

1 December 2004 in Nature Reviews Genetics
Verified
Journal Article
Closed access
PDF file
RHRoger Horton
Roger Horton
LWLaurens Wilming
Laurens Wilming
VRVikki Rand
Vikki Rand
RLRuth Caroline Lovering
Ruth Caroline Lovering
EBElspeth Bruford
Elspeth Bruford
SBStephan Beck
Stephan Beck

1 March 2008 in Immunity
Verified
Journal Article
Closed access
JTJenny P.-Y. Ting
Jenny P.-Y. Ting
RLRuth Caroline Lovering
Ruth Caroline Lovering
EAEmad S. Alnemri
Emad S. Alnemri
JBJohn Bertin
John Bertin
JBJeremy M. Boss
Jeremy M. Boss
Peter A WardPeter A Ward
Peter A Ward