Ebru Çiçek

Dr. Ebru Çiçek

orcid

Research Focus & Metrics

Academic Career Length

2Years (2025-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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30 December 2025 in Future Oncology
Verified
Journal Article
Closed access
ZBZELİHA BİRSİN
ZELİHA BİRSİN
SJSeda Jeral
Seda Jeral
SCSelin Cebeci
Selin Cebeci
EÇEmir Çerme
Emir Çerme
VAVALİ ALİYEV
VALİ ALİYEV
ÖAÖzkan Alan
Özkan Alan
Adjuvant chemotherapy decision-making in stage II colon cancer remains challenging. Although multidisciplinary tumor boards (MDTs) guide treatment, their recommendations vary. Artificial intelligence (AI) tools such as ChatGPT may support decision-making, but direct comparative evidence with MDTs is limited. We retrospectively analyzed 179 patients with stage II colon cancer who underwent surgery between 2019-2024. MDT recommendations (observation, fluoropyrimidine monotherapy, or oxaliplatin-based chemotherapy) were compared with ChatGPT-5 outputs. Clinical factors - including age, ECOG performance status (PS), tumor stage, minor risk factors, and mismatch repair (MMR) status - were incorporated. Agreement was evaluated using Cohen's kappa (κ) and McNemar's test. Across the three treatment categories, agreement between MDT and AI was moderate (70.4%, κ = 0.542, p < 0.001), while in the binary comparison of adjuvant therapy versus observation, concordance improved to substantial (91.1%, κ = 0.719, p < 0.001). Discordance mainly reflected AI's tendency to escalate therapy. Agreement decreased in patients ≥70 years, those with ECOG PS 2, and those with multiple risk factors. AI showed moderate agreement with MDTs in detailed three-category recommendations but substantial concordance in binary adjuvant decisions. While AI may serve as a supportive tool, clinical judgment remains essential, particularly for elderly and frail patients.

4 April 2026 in Cancers
Verified
Journal Article
Open access
PDF file
SGSüleyman Sami Güzel
Süleyman Sami Güzel
KTKubilay Tay
Kubilay Tay
EÇEbru Çiçek
Ebru Çiçek
SJSeda Jeral
Seda Jeral
SASuheyla Atak
Suheyla Atak
ÖAÖzkan Alan
Özkan Alan
Objectives: Hemophagocytic lymphohistiocytosis (HLH) is a rare but life-threatening hyperinflammatory syndrome increasingly reported with immune checkpoint inhibitors (ICIs). However, comparative real-world data across different ICI classes and treatment strategies are limited. This study aimed to characterize HLH reporting patterns associated with ICIs and to compare disproportionality signals among PD-1 inhibitors, PD-L1 inhibitors, and combination regimens using the U.S. Food and Drug Administration Adverse Event Reporting System (FAERS). Methods: A retrospective pharmacovigilance analysis was performed using FAERS reports submitted between 2013 and 2025. HLH-related cases were identified using core Medical Dictionary for Regulatory Activities (MedDRA) Preferred Terms. Reporting odds ratios (RORs) with 95% confidence intervals (Cis) were calculated to assess disproportionality across ICI treatment strategies, with ICI monotherapy as the reference. Restricted analyses compared PD-1 inhibitors, PD-L1 inhibitors, and ICI plus CTLA-4 inhibitor therapy. Results: A total of 733 HLH-related reports associated with ICIs were identified. The median age was 65 years (range 1–92), and 54.9% of patients were male. Lung cancer (34.4%) and melanoma (16.0%) were the most frequently reported malignancies. ICI monotherapy accounted for 34.7% of cases, while combination regimens included ICI plus chemotherapy (31.6%), ICI plus targeted therapy (17.8%), and ICI plus CTLA-4 inhibitors (15.9%). All cases were classified as serious adverse events; hospitalization occurred in 69.2% and death in 25.1%. Compared with monotherapy, combination regimens showed higher reporting odds of HLH, with the strongest signal for ICI plus targeted therapy (ROR 2.17, 95% CI 1.72–2.73). PD-1 inhibitors demonstrated higher reporting odds than PD-L1 inhibitors (ROR 1.86, 95% CI 1.41–2.46). Conclusions: This large real-world pharmacovigilance analysis demonstrates differential HLH reporting patterns across ICI classes and treatment strategies. Higher reporting odds with combination regimens and PD-1 inhibitors highlight the need for heightened clinical vigilance, particularly in combination treatment settings.

Verified
Journal Article
Open access
PDF file
SCSelin Cebeci
Selin Cebeci
ZBZELİHA BİRSİN
ZELİHA BİRSİN
SJSeda Jeral
Seda Jeral
HAHamza Abbasov
Hamza Abbasov
VAVALİ ALİYEV
VALİ ALİYEV
ÖAÖzkan Alan
Özkan Alan
Objective: This study aimed to evaluate the prognostic significance of positron emission tomography/computed tomography (PET/CT)-derived sarcopenia in patients with hormone receptor-positive, HER2-negative metastatic breast cancer treated with cyclin-dependent kinase 4/6 (CDK4/6) inhibitors. Methods: This retrospective single-center study included 77 patients treated between January 2018 and March 2025. Sarcopenia was assessed using skeletal muscle index (SMI) at the L3 level on fluorodeoxyglucose (FDG) PET/CT. Patients were classified as sarcopenic or non-sarcopenic. Clinical, nutritional parameters including body mass index (BMI) and prognostic nutritional index (PNI), and inflammatory parameters including pan-immune inflammation value (PIV) were analyzed. The primary endpoint was progression-free survival (PFS). Results: Sarcopenia was present in 35.1% of patients. After a median follow-up of 38 months, sarcopenic patients had significantly shorter PFS compared with non-sarcopenic patients (18 vs. 38 months; HR: 2.37, 95% CI 1.12–4.99, p = 0.02, multivariable analysis). In multivariable analysis, sarcopenia, recurrent disease, brain metastasis, and liver metastasis were independent predictors of PFS. No significant association was observed between sarcopenia and overall survival. BMI, PNI, and PIV were not associated with survival outcomes. Toxicity profiles were comparable between groups. Conclusions: PET/CT-derived sarcopenia may be a prognostic factor for PFS in patients receiving CDK4/6 inhibitors, whereas conventional nutritional and inflammatory markers are not. These findings support the clinical utility of imaging-based body composition assessment. Prospective studies incorporating functional measures of sarcopenia are warranted.

3 December 2025 in Genes
Verified
Journal Article
Open access
PDF file
KCKÜBRA CANASLAN
KÜBRA CANASLAN
EEEMRE EKEN
EMRE EKEN
MBMehmet Bilici
Mehmet Bilici
FBFahriye merve Balcıoğlu
Fahriye merve Balcıoğlu
BOBanu Ozturk
Banu Ozturk
AKAziz Karaoğlu
Aziz Karaoğlu
Background/Objectives: Genomic profiling guides treatment in metastatic non-small-cell lung cancer (mNSCLC), yet country-level data from Türkiye remain limited. Methods: We retrospectively analyzed consecutive patients with mNSCLC diagnosed between January 2018 and March 2025 across tertiary centers in all seven regions. Variables included demographics, smoking, histology, testing modality (single-gene vs. next-generation sequencing [NGS]), targetable genomic alterations (TGAs) and co-mutations, and programmed death-ligand 1 (PD-L1) tumor proportion score. Results: Among 1023 patients (mean age 64 years; 76.4% male), tobacco exposure was frequent (mean 42.1 pack-years); 16.9% were never-smokers. NGS use increased over time, exceeding 90% by 2025. TGAs were detected in 28.3% (EGFR 16.0%, ALK 5.0%, KRAS G12C 2.6%, BRAF V600E 3.2%; ROS1, MET exon 14, HER2, NTRK ≤ 2.5%; no RET). EGFR alterations occurred in 19% of non-squamous carcinomas and 6% of squamous cell carcinomas (SCCs), suggesting an intermediate East–West pattern. Among NGS-tested samples, TP53 was the most frequent co-mutation (33.1%), followed by alterations in CDKN2A, PIK3CA, FGFR, STK11, and KEAP1. Conclusions: In this large, multicenter Turkish real-world cohort, the TGA spectrum broadly mirrors global patterns while revealing local nuances; EGFR mutations were more frequent than expected in SCC, and nationwide NGS adoption is accelerating. Limitations include retrospective design, non-centralized PD-L1 testing, and missing data. Prospective, standardized studies integrating outcomes and resistance mechanisms are warranted to refine regional precision oncology.
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15 September 2026 in Journal of Clinical Medicine
Verified
Journal Article
Open access
PDF file
EÇEbru Çiçek
Ebru Çiçek
ZBZELİHA BİRSİN
ZELİHA BİRSİN
MFMehmet Cem Fidan
Mehmet Cem Fidan
HAHamza Abbasov
Hamza Abbasov
MGMurat Günaltılı
Murat Günaltılı
ÖAÖzkan Alan
Özkan Alan
Background: The Royal Marsden Hospital (RMH) score is a simple prognostic score based on serum albumin, lactate dehydrogenase, and the number of metastatic organ sites. Although its prognostic value has been demonstrated across several advanced cancer populations, evidence specifically in patients with de novo metastatic colorectal cancer (mCRC) initiating first-line treatment remains limited. Methods: This single-center retrospective cohort study included 189 patients with de novo mCRC who initiated first-line systemic treatment between January 2015 and January 2026. Patients were classified as low risk (RMH score 0–1) or high risk (RMH score 2–3). Progression-free survival (PFS) and overall survival (OS) were estimated using the Kaplan–Meier method, and factors independently associated with survival outcomes were evaluated using multivariable Cox regression. Results: Of the 189 patients, 142 (75.1%) were classified as low risk and 47 (24.9%) as high risk. Median PFS and OS for the entire cohort were 11.3 and 27.4 months, respectively. Median PFS was 11.8 months in the low-risk group and 7.6 months in the high-risk group (p < 0.001). Median OS was 33.8 and 13.7 months, respectively (p < 0.001). After adjustment for relevant clinicopathological factors, high-risk RMH status remained independently associated with shorter PFS (HR, 2.16; 95% CI, 1.51–3.09; p < 0.001) and OS (HR, 2.95; 95% CI, 2.03–4.29; p < 0.001). Conclusions: The RMH score was independently associated with both PFS and OS in patients with de novo mCRC initiating first-line systemic treatment. Based on simple and routinely available baseline parameters, the RMH score may serve as a complementary prognostic marker alongside established clinical and molecular factors.

17 April 2026 in Journal of Clinical Medicine
Verified
Journal Article
Open access
PDF file
MGMurat Günaltılı
Murat Günaltılı
MGMurad Guliyev
Murad Guliyev
ZBZELİHA BİRSİN
ZELİHA BİRSİN
EÇEmir Çerme
Emir Çerme
VAVALİ ALİYEV
VALİ ALİYEV
ÖAÖzkan Alan
Özkan Alan
Background/Objectives: We evaluated the clinical outcomes of two commonly used approaches for managing oligoprogression arising during first-line therapy for metastatic hormone-sensitive prostate cancer (mHSPC): metastasis-directed radiotherapy (RT) with continuation of the ongoing systemic regimen and immediate transition to another systemic treatment. Methods: A total of 81 patients with mHSPC who experienced radiologically confirmed oligoprogression during first-line systemic therapy were retrospectively evaluated. Oligoprogression was defined as progression involving three or fewer metastatic sites. Patients were categorized into an RT group (metastasis-directed RT with continuation of the same regimen) or a treatment-change group (immediate switch in systemic therapy without RT). Post-oligoprogression radiologic progression-free survival (rPFS) and overall survival (OS) were evaluated using Kaplan–Meier estimates and Cox proportional hazards models. Results: Thirty-one patients received metastasis-directed RT, whereas fifty underwent a change in systemic therapy. The median post-oligoprogression rPFS was 25.8 months (95% CI, 16.3–35.2) in the entire cohort and did not differ significantly between the treatment-change (26.8 months) and RT groups (22.7 months; p = 0.828). The median OS was 42.6 months overall, with comparable outcomes between the treatment-change (42.6 months) and RT groups (52.4 months; p = 0.452). Conclusions: In patients with mHSPC who developed oligoprogression during first-line systemic therapy, metastasis-directed RT with continuation of the same regimen and immediate change in systemic treatment were associated with comparable post-oligoprogression outcomes in our cohort. These findings suggest that both strategies may be feasible in selected patients. Prospective studies may help clarify which patients are more likely to benefit from each strategy.