Meike Nauta

Ms. Meike Nauta

orcid

Research Focus & Metrics

Academic Career Length

10Years (2017-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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13 July 2023 in ACM Computing Surveys
Verified
Journal Article
Open access
MNMeike Nauta
Meike Nauta
JTJan Trienes
Jan Trienes
SPShreyasi Pathak
Shreyasi Pathak
ENElisa Nguyen
Elisa Nguyen
MPMichelle Peters
Michelle Peters
CSChristin Seifert
Christin Seifert
The rising popularity of explainable artificial intelligence (XAI) to understand high-performing black boxes raised the question of how to evaluate explanations of machine learning (ML) models. While interpretability and explainability are often presented as a subjectively validated binary property, we consider it a multi-faceted concept. We identify 12 conceptual properties, such as Compactness and Correctness, that should be evaluated for comprehensively assessing the quality of an explanation. Our so-called Co-12 properties serve as categorization scheme for systematically reviewing the evaluation practices of more than 300 papers published in the past 7 years at major AI and ML conferences that introduce an XAI method. We find that one in three papers evaluate exclusively with anecdotal evidence, and one in five papers evaluate with users. This survey also contributes to the call for objective, quantifiable evaluation methods by presenting an extensive overview of quantitative XAI evaluation methods. Our systematic collection of evaluation methods provides researchers and practitioners with concrete tools to thoroughly validate, benchmark, and compare new and existing XAI methods. The Co-12 categorization scheme and our identified evaluation methods open up opportunities to include quantitative metrics as optimization criteria during model training to optimize for accuracy and interpretability simultaneously.

Verified
Journal Article
Open access
PDF file
MNMeike Nauta
Meike Nauta
DBDoina Bucur
Doina Bucur
CSChristin Seifert
Christin Seifert
Having insight into the causal associations in a complex system facilitates decision making, e.g., for medical treatments, urban infrastructure improvements or financial investments. The amount of observational data grows, which enables the discovery of causal relationships between variables from observation of their behaviour in time. Existing methods for causal discovery from time series data do not yet exploit the representational power of deep learning. We therefore present the Temporal Causal Discovery Framework (TCDF), a deep learning framework that learns a causal graph structure by discovering causal relationships in observational time series data. TCDF uses attention-based convolutional neural networks combined with a causal validation step. By interpreting the internal parameters of the convolutional networks, TCDF can also discover the time delay between a cause and the occurrence of its effect. Our framework learns temporal causal graphs, which can include confounders and instantaneous effects. Experiments on financial and neuroscientific benchmarks show state-of-the-art performance of TCDF on discovering causal relationships in continuous time series data. Furthermore, we show that TCDF can circumstantially discover the presence of hidden confounders. Our broadly applicable framework can be used to gain novel insights into the causal dependencies in a complex system, which is important for reliable predictions, knowledge discovery and data-driven decision making.

24 December 2021 in Diagnostics
Verified
Journal Article
Open access
PDF file
MNMeike Nauta
Meike Nauta
RWRicky Walsh
Ricky Walsh
ADAdam Dubowski
Adam Dubowski
CSChristin Seifert
Christin Seifert
Machine learning models have been successfully applied for analysis of skin images. However, due to the black box nature of such deep learning models, it is difficult to understand their underlying reasoning. This prevents a human from validating whether the model is right for the right reasons. Spurious correlations and other biases in data can cause a model to base its predictions on such artefacts rather than on the true relevant information. These learned shortcuts can in turn cause incorrect performance estimates and can result in unexpected outcomes when the model is applied in clinical practice. This study presents a method to detect and quantify this shortcut learning in trained classifiers for skin cancer diagnosis, since it is known that dermoscopy images can contain artefacts. Specifically, we train a standard VGG16-based skin cancer classifier on the public ISIC dataset, for which colour calibration charts (elliptical, coloured patches) occur only in benign images and not in malignant ones. Our methodology artificially inserts those patches and uses inpainting to automatically remove patches from images to assess the changes in predictions. We find that our standard classifier partly bases its predictions of benign images on the presence of such a coloured patch. More importantly, by artificially inserting coloured patches into malignant images, we show that shortcut learning results in a significant increase in misdiagnoses, making the classifier unreliable when used in clinical practice. With our results, we, therefore, want to increase awareness of the risks of using black box machine learning models trained on potentially biased datasets. Finally, we present a model-agnostic method to neutralise shortcut learning by removing the bias in the training dataset by exchanging coloured patches with benign skin tissue using image inpainting and re-training the classifier on this de-biased dataset.

1 January 2021
Verified
Book Chapter
Closed access
PDF file
MNMeike Nauta
Meike Nauta
AJAnnemarie Jutte
Annemarie Jutte
JPJesper Provoost
Jesper Provoost
CSChristin Seifert
Christin Seifert


15 August 2018
Verified
Book Chapter
Closed access
PDF file
MNMeike Nauta
Meike Nauta
DBDoina Bucur
Doina Bucur
MSMariëlle Stoelinga
Mariëlle Stoelinga