Objective: Electrocardiogram (ECG) signals commonly suffer noise interference, such as baseline wander. High-quality and high-fidelity reconstruction of the ECG signals is of great significance to diagnosing cardiovascular diseases. Therefore, this paper proposes a novel ECG baseline wander and noise removal technology. Methods: We extended the diffusion model in a conditional manner that was specific to the ECG signals, namely the Deep Score-Based Diffusion model for Electrocardiogram baseline wander and noise removal (DeScoD-ECG). Moreover, we deployed a multi-shots averaging strategy that improved signal reconstructions. We conducted the experiments on the QT Database and the MIT-BIH Noise Stress Test Database to verify the feasibility of the proposed method. Baseline methods are adopted for comparison, including traditional digital filter-based and deep learning-based methods. Results: The quantities evaluation results show that the proposed method obtained outstanding performance on four distance-based similarity metrics with at least 20% overall improvement compared with the best baseline method. Conclusion: This paper demonstrates the state-of-the-art performance of the DeScoD-ECG for ECG baseline wander and noise removal, which has better approximations of the true data distribution and higher stability under extreme noise corruptions. Significance: This study is one of the first to extend the conditional diffusion-based generative model for ECG noise removal, and the DeScoD-ECG has the potential to be widely used in biomedical applications.
Digital in-line holography (DIH) is broadly used to reconstruct 3D shapes of microscopic objects from their 2D holograms. One of the technical challenges in the reconstruction stage is eliminating the twin image originating from the phase-conjugate wavefront. The twin image removal is typically formulated as a non-linear inverse problem since the scattering process involved in generating the hologram is irreversible. Conventional phase recovery methods rely on multiple holographic imaging at different distances from the object plane along with iterative algorithms. Recently, end-to-end deep learning (DL) methods are utilized to reconstruct the object wavefront (as a surrogate for the 3D structure of the object) directly from the single-shot in-line digital hologram. However, massive data pairs are required to train the utilize DL model for an acceptable reconstruction precision. In contrast to typical image processing problems, well-curated datasets for in-line digital holography do not exist. The trained models are also highly influenced by the objects’ morphological properties, hence can vary from one application to another. Therefore, data collection can be prohibitively laborious and time-consuming, as a critical drawback of using DL methods for DH. In this paper, we propose a novel DL method that takes advantages of the main characteristic of auto-encoders for blind single-shot hologram reconstruction solely based on the captured sample and without the need for a large dataset of samples with available ground truth to train the model. The simulation results demonstrate the superior performance of the proposed method compared to the state-of-the-art methods used for single-shot hologram reconstruction.
8 February 2024 in Computer Methods and Programs in Biomedicine
Deep-learning algorithms hold promise in processing physiological signal data, including electrocardiograms (ECGs) and electroencephalograms (EEGs). However, healthcare often requires long-term monitoring, posing a challenge to traditional deep-learning models. These models are generally trained once and then deployed, which limits their ability to adapt to the dynamic and evolving nature of healthcare scenarios. Continual learning—known for its adaptive learning capabilities over time—offers a promising solution to these challenges. However, there remains an absence of consolidated literature, which reviews the techniques, applications, and challenges of continual learning specific to physiological signal analysis, as well as its future directions. Bridging this gap, our review seeks to provide an overview of the prevailing techniques and their implications for smart healthcare. We delineate the evolution from traditional approaches to the paradigms of continual learning. We aim to offer insights into the challenges faced and outline potential paths forward. Our discussion emphasizes the need for benchmarks, adaptability, computational efficiency, and user-centric design in the development of future healthcare systems.
29 October 2018 in Bulletin of Entomological Research
A stable reference gene is a key prerequisite for accurate assessment of gene expression. At present, the real-time reverse transcriptase quantitative polymerase chain reaction has been widely used in the analysis of gene expression in a variety of organisms.Neoseiulus barkeriHughes (Acari: Phytoseiidae) is a major predator of mites on many important economically crops. Until now, however, there are no reports evaluating the stability of reference genes in this species. In view of this, we used GeNorm, NormFinder, BestKeeper, and RefFinder software tools to evaluate the expression stability of 11 candidate reference genes in developmental stages and under various abiotic stresses. According to our results, β-ACTandHsp40were the top two stable reference genes in developmental stages. TheHsp60andHsp90were the most stable reference genes in various acaricides stress. For alterations in temperature,Hsp40and α-TUBwere the most suitable reference genes. About UV stress,EF1α and α-TUBwere the best choice, and for the different prey stress, β-ACTand α-TUBwere best suited. In normal conditions, the β-ACT and α-TUB were the two of the highest stable reference genes to respond to all kinds of stresses. The current study provided a valuable foundation for the further analysis of gene expression inN. barkeri.
5 March 2024 in IEEE Journal of Biomedical and Health Informatics
Medical time series data are indispensable in healthcare, providing critical insights for disease diagnosis, treatment planning, and patient management. The exponential growth in data complexity, driven by advanced sensor technologies, has presented challenges related to data labeling. Self-supervised learning (SSL) has emerged as a transformative approach to address these challenges, eliminating the need for extensive human annotation. In this study, we introduce a novel framework for Medical Time Series Representation Learning, known as MTS-LOF. MTS-LOF leverages the strengths of Joint-Embedding SSL and Masked Autoencoder (MAE) methods, offering a unique approach to representation learning for medical time series data. By combining these techniques, MTS-LOF enhances the potential of healthcare applications by providing more sophisticated, context-rich representations. Additionally, MTS-LOF employs a multi-masking strategy to facilitate occlusion-invariant feature learning. This approach allows the model to create multiple views of the data by masking portions of it. By minimizing the discrepancy between the representations of these masked patches and the fully visible patches, MTS-LOF learns to capture rich contextual information within medical time series datasets. The results of experiments conducted on diverse medical time series datasets demonstrate the superiority of MTS-LOF over other methods. These findings hold promise for significantly enhancing healthcare applications by improving representation learning. Furthermore, our work delves into the integration of Joint-Embedding SSL and MAE techniques, shedding light on the intricate interplay between temporal and structural dependencies in healthcare data. This understanding is crucial, as it allows us to grasp the complexities of healthcare data analysis.