Two high value species, yellowtail kingfish ( Seriola lalandi ) and hāpuku (groper, Polyprion oxygeneios ), have been identified as suitable new candidates for New Zealand aquaculture. This paper reviews the research by NIWA and collaborators conducted to test the biological, technological and economic feasibility of farming these two species. NIWA now has the capability to produce sufficient kingfish fingerlings per year to meet the needs of the early stages of an industry. Advances in hāpuku aquaculture have also been significant, from spawning in captivity through to the selection of juveniles for improved growth. Recently, the first spawning of captive hāpuku F1 broodstock and production of F2 eggs, larvae and juveniles was achieved. Although hāpuku larval survival remains variable, the ability to close the life cycle, and the availability of domesticated broodstock, provide a significant step forward and increase the chances of this species being commercially farmed.

Hāpuku (Polyprion oxygeneios) is a member of the wreckfish family (Polyprionidae) and is highly regarded as a food fish. Although adults grow relatively slowly, juveniles exhibit low feed conversion ratios and can reach market size in 1–2 years, making P. oxygeneios a strong candidate for aquaculture. However, they can take over 5 years to reach sexual maturity in captivity and are not externally sexually dimorphic, complicating many aspects of broodstock management. Understanding the sex determination system of P. oxygeneios and developing accurate assays to assign genetic sex will contribute significantly towards its full-scale commercialisation. DNA from parents and sexed offspring (n = 57) from a single family of captive bred P. oxygeneios was used as a template for double digestion Restriction-site Associated DNA (ddRAD) sequencing. Two libraries were constructed using SbfI – SphI and SbfI – NcoI restriction enzyme combinations, respectively. Two runs on an Illumina MiSeq platform generated 70,266,464 raw reads, identifying 19,669 RAD loci. A combined sex linkage map (1367 cM) was constructed based on 1575 Single Nucleotide Polymorphism (SNP) markers that resolved into 35 linkage groups. Sex-specific linkage maps were of similar size (1132 and 1168 cM for male and female maps respectively). A single major sex-determining locus, found to be heterogametic in males, was mapped to linkage group 14. Several markers were found to be in strong linkage disequilibrium with the sex-determining locus. Allele-specific PCR assays were developed for two of these markers, SphI6331 and SphI8298, and demonstrated to accurately differentiate sex in progeny within the same pedigree. Comparative genomic analyses indicated that many of the linkage groups within the P. oxygeneios map share a relatively high degree of homology with those published for the European seabass (Dicentrarchus labrax). P. oxygeneios has an XX/XY sex determination system. Evaluation of allele-specific PCR assays, based on the two SNP markers most closely associated with phenotypic sex, indicates that a simple molecular assay for sexing P. oxygeneios should be readily attainable. The high degree of synteny observed with D. labrax should aid further molecular genetic study and exploitation of hāpuku as a food fish.

Quantitative real-time PCR (qPCR) has been the method of choice for the quantification of mRNA. Due to the various artifactual factors that may affect the accuracy of qPCR, internal reference genes are most often used to normalize qPCR data. Recently, many studies have employed computer programs such as GeNorm, BestKeeper and NormFinder in selecting reference genes, but very few statistically validate the outcomes of these programs. Thus, in this study, we selected reference genes for qPCR of liver and ovary samples of yellow (juvenile), migratory (silver) and 11-KT treated juveniles of New Zealand shortfinned eels (Anguilla australis) using the three computer programs and validate the selected genes statistically using REST 2009 software and the Mann-Whitney test. We also tested for the repeatability of use for the best reference genes by applying them to a data set obtained in a similar experiment conducted the previous year.

The Yellow-eyed Penguin (Megadyptes antipodes) is monomorphic but exhibits subtle sexual morphometric dimorphism. Information on the sexes of these birds is needed for informed management of the species and the construction of accurate population models. Using DNA analysis and Discriminant Function Analysis on head and foot measurements, we tested whether adults and fledglings of Yellow-eyed Penguin can be sexed using morphometry. We found that head and foot measurements can be used to correctly sex up to 93% of adults. Using only foot length, 88% of fledglings can be sexed accurately. As age until fledging was found to have an effect on morphometric variables, sexing should be conducted as synchronized as possible when chicks are over 90 days of age. We recommend that error rates inherent in sexing fledglings be taken into account when publishing sex-ratio data and subsequent analyses, particularly when age of fledglings could not be determined. The use of whole-skull measurements for sexing may...