The Shallow Benthic Zonation is one of the most important achievements of biostratigraphy in the last twenty years. Here we summarize the state of the art in the field of Larger Benthic Foraminifera (LBF) and sketch the main lines of research that are improving the precision and usefulness of this scale. The goal of updating the zonation requires a wealth of data coming not only from biostratigraphic investigations but also from paleoenvironmental analyses, biological knowledge, rigorous taxonomic determination, and understanding of paleobiogeography. The papers collected for this special issue are contributions to this broad research program.

This work shows the potential for applying three-dimensional biometry to studying cell growth in larger benthic foraminifera. The volume of each test chamber was measured from the three-dimensional model obtained by means of computed tomography. Analyses of cell growth based on the sequence of chamber volumes revealed constant and significant oscillations for all investigated specimens, characterized by periods of approximately 15, 30, 90, and 360 days. Possible explanations for these periods are connected to tides, lunar cycles, and seasonality. The potential to record environmental oscillations or fluctuations during the lifetime of larger foraminifera is pivotal for reconstructing short-term paleoenvironmental variations or for gaining insight into the influence of tides or tidal current on the shallow-water benthic fauna in both recent and fossil environments.

The trace fossil Trichichnus is proposed as an indicator of fossil bioelectric bacterial activity at the oxic–anoxic interface zone of marine sediments. This fulfils the idea that such processes, commonly found in the modern realm, should be also present in the geological past. Trichichnus is an exceptional trace fossil due to its very thin diameter (mostly less than 1 mm) and common pyritic filling. It is ubiquitous in some fine-grained sediments, where it has been interpreted as a burrow formed deeper than any other trace fossils, below the redox boundary. Trichichnus, formerly referred to as deeply burrowed invertebrates, has been found as remnant of a fossilized intrasediment bacterial mat that is pyritized. As visualized in 3-D by means of X-ray computed microtomography scanner, Trichichnus forms dense filamentous fabric, which reflects that it is produced by modern large, mat-forming, sulfide-oxidizing bacteria, belonging mostly to Thioploca-related taxa, which are able to house a complex bacterial consortium. Several stages of Trichichnus formation, including filamentous, bacterial mat and its pyritization, are proposed to explain an electron exchange between oxic and suboxic/anoxic layers in the sediment. Therefore, Trichichnus can be considered a fossilized "electric wire".

The use of micro-computed tomography (μCT) provides a unique opportunity to look inside the shells of larger benthic foraminifera to investigate their structure by measuring linear and volumetric parameters. For this study, gamonts/schizonts and agamonts of the species Heterostegina depressa d'Orbigny were examined by μCT; each single chamber's volume was digitally measured. This approach enables cell growth to be recognised in terms of chamber volume sequence, which progressively increases until reproduction occurs. This sequence represents the ontogeny of the foraminiferal cell and has been used here to investigate controlling factors potentially affecting the process of chamber formation. This is manifested as instantaneous or periodic deviations of the realised chamber volumes derived from modelled growth functions. The results obtained on naturally grown specimens show oscillations in chamber volumes which can be modelled by sums of sinusoidal functions. A set of functions with similar periods in all investigated specimens points to lunar and tidal cycles. To determine whether such cyclic signals are genuine and not the effects of a theoretical model, the same analysis was conducted on specimens held in a closed laboratory facility, as they should not be affected by natural environmental effects. Surprisingly, similar cyclicities were observed in such samples. However, a solely genetic origin of these cycles couldn't be verified either. Therefore, detailed analysis on the phase equality of these growth oscillations have been done. This approach is pivotal for proving that the oscillatory patterns discovered in LBF are indeed genuine signals, and on how chamber growth might be influenced by tidal currents or lunar months.

The highest biodiversity of marine fishes occurs in South-east Asia in the Indo-Australian Archipelago (IAA). However, the fossil record of fishes is very sparse and extremely incomplete in the IAA. Here we present a diverse fossil cartilaginous fish fauna from Borneo, found in late Miocene sediments in Brunei Darussalam. This fauna provides the first insight into the types of fishes that existed in the IAA region about 6.5–8 million years ago. The chondrichthyan remains belong to 24 selachian and batoid taxa. The shark fauna is dominated by Carcharhiniformes, comprising three families with at least 12 taxa, most related to modern species: Hemigaleidae (one species), Carcharhinidae (nine) and Sphyrnidae (two). In addition, the teeth of one Lamniformes shark, the extinct giant macro-predator Otodus (Megaselachus) megalodon, are present in the fauna. The batoids are dominated by Myliobatiformes from the following families: Dasyatidae (three species), Aetobatidae (one), Myliobatidae (three), Rhinopteridae (one), while three taxa of the order Rhinopristiformes were also recovered: Pristidae (one species), and Rhinidae (two). Such diversity of fossil cartilaginous fish has never before been reported from the tropical region of South-east Asia. The dominance of the carcharhinid sharks and small rays suggests a shallow marine, coastal palaeoenvironment. The presence of the freshwater shark genus Glyphis indicates a nearby fluvial influence. Some species of the ray genera, such as Himantura or Pastinachus, have also been reported from estuaries and fresh water. The lack of some generally common Neogene taxa, such as Odontaspididae, Lamnidae and Alopidae, may be linked to such local factors and the coastal shallow-water environment.

Previous attempts to quantify the test-flattening trend in Heterostegina depressa with water depth have been rather unsuccessful. Due to its broad depth distribution, H. depressa is a perfect model species to calibrate test flattening as a bathymetric signal for fossil assemblages. This might enable us to better reconstruct paleoenvironments of fossil communities of larger foraminifera or even provide clues to the degree of transport in allochthonous deposits. In this study, we used growth-independent functions to describe the change of test thickness throughout ontogeny. Four growth-invariant characters, deriving from these functions, clearly quantify a transition of individuals with thicker to thinner central parts along the water-depth gradient. This transition is probably controlled by light intensity, because the photosymbionts of H. depressa (diatoms) are most effective at low irradiation levels. Thus, specimens at shallower depths grow thicker to reduce light penetration, whereas specimens living deeper than the light optimum increase their surface by flattening to obtain better exposure to light.