A scanning electron microscope survey was initiated to determine if the previously reported findings of “dinosaurian soft tissues” could be identified in situ within the bones. The results obtained allowed a reinterpretation of the formation and preservation of several types of these “tissues” and their content. Mineralized and non-mineralized coatings were found extensively in the porous trabecular bone of a variety of dinosaur and mammal species across time. They represent bacterial biofilms common throughout nature. Biofilms form endocasts and once dissolved out of the bone, mimic real blood vessels and osteocytes. Bridged trails observed in biofilms indicate that a previously viscous film was populated with swimming bacteria. Carbon dating of the film points to its relatively modern origin. A comparison of infrared spectra of modern biofilms with modern collagen and fossil bone coatings suggests that modern biofilms share a closer molecular make-up than modern collagen to the coatings from fossil bones. Blood cell size iron-oxygen spheres found in the vessels were identified as an oxidized form of formerly pyritic framboids. Our observations appeal to a more conservative explanation for the structures found preserved in fossil bone.

The trace fossil Trichichnus is proposed as an indicator of fossil bioelectric bacterial activity at the oxic–anoxic interface zone of marine sediments. This fulfils the idea that such processes, commonly found in the modern realm, should be also present in the geological past. Trichichnus is an exceptional trace fossil due to its very thin diameter (mostly less than 1 mm) and common pyritic filling. It is ubiquitous in some fine-grained sediments, where it has been interpreted as a burrow formed deeper than any other trace fossils, below the redox boundary. Trichichnus, formerly referred to as deeply burrowed invertebrates, has been found as remnant of a fossilized intrasediment bacterial mat that is pyritized. As visualized in 3-D by means of X-ray computed microtomography scanner, Trichichnus forms dense filamentous fabric, which reflects that it is produced by modern large, mat-forming, sulfide-oxidizing bacteria, belonging mostly to Thioploca-related taxa, which are able to house a complex bacterial consortium. Several stages of Trichichnus formation, including filamentous, bacterial mat and its pyritization, are proposed to explain an electron exchange between oxic and suboxic/anoxic layers in the sediment. Therefore, Trichichnus can be considered a fossilized "electric wire".

Cobaltite-cemented pyrite framboids are reported from the base of the Kupferschiefer in the Lubin-Sieroszowice mining district in southern Poland. In the framboids, cobaltite occurs interstitial to the pyrite crystals. The cobaltite-cemented framboids are confined to within a few cm either side of the boundary between the Weissliegendes sandstone and the Kupferschiefer laminated organic-rich shales. Textural relations and distribution of the cobaltite is interpreted as indicating that the framboids acted as a site of preferred cobaltite precipitation and that the cobaltite precipitated in response to the changing chemical environment at the Weissliegendes/Kupferschiefer contact. It is proposed that the texture may have formed as a result of desorption of Co and/or As which had been adsorbed onto the monosulphide precursors to the framboidal pyrite. Desorption during the transition to pyrite resulted in cobaltite saturation within the framboid and subsequent precipitation. The source of the Co and As was probably oxyhydroxides which exist in the upper oxic part of the Weissliegendes.