Jakub Dalibor Rybka

Prof. Dr. Jakub Dalibor Rybka

Center for Advanced Technology, Adam Mickiewicz University in Poznań, Poland

Research Focus & Metrics

Academic Career Length

15Years (2012-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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30 December 2021 in ACS Synthetic Biology
Verified
Journal Article
Open access
AOAnna Olejnik
Anna Olejnik
JSJulia Anna Semba
Julia Anna Semba
AKAdam Kulpa
Adam Kulpa
ADAleksandra Dańczak-Pazdrowska
Aleksandra Dańczak-Pazdrowska
Jakub Dalibor RybkaJakub Dalibor Rybka
Jakub Dalibor Rybka
JGJustyna Gornowicz-Porowska
Justyna Gornowicz-Porowska
In recent years, significant progress has been observed in the field of skin bioprinting, which has a huge potential to revolutionize the way of treatment in injury and surgery. Furthermore, it may be considered as an appropriate platform to perform the assessment and screening of cosmetic and pharmaceutical formulations. Therefore, the objective of this paper was to review the latest advances in 3D bioprinting dedicated to skin applications. In order to explain the boundaries of this technology, the architecture and functions of the native skin were briefly described. The principles of bioprinting methods were outlined along with a detailed description of key elements that are required to fabricate the skin equivalents. Next, the overview of recent progress in 3D bioprinting studies was presented. The article also highlighted the potential applications of bioengineered skin substituents in various fields including regenerative medicine, modeling of diseases, and cosmetics/drugs testing. The advantages, limitations, and future directions of this technology were also discussed.

27 February 2018 in Scientific Reports
Verified
Journal Article
Open access
PDF file
KWKamil R. Wierzbinski
Kamil R. Wierzbinski
TSTomasz Szymanski
Tomasz Szymanski
NRNatalia Rozwadowska
Natalia Rozwadowska
Jakub Dalibor RybkaJakub Dalibor Rybka
Jakub Dalibor Rybka
AZAgnieszka Zimna
Agnieszka Zimna
Maciej KurpiszMaciej Kurpisz
Maciej Kurpisz
Myocardial infarction (MI) is one of the most frequent causes of death in industrialized countries. Stem cells therapy seems to be very promising for regenerative medicine. Skeletal myoblasts transplantation into postinfarction scar has been shown to be effective in the failing heart but shows limitations such, e.g. cell retention and survival. We synthesized and investigated superparamagnetic iron oxide nanoparticles (SPIONs) as an agent for direct cell labeling, which can be used for stem cells imaging. High quality, monodisperse and biocompatible DMSA-coated SPIONs were obtained with thermal decomposition and subsequent ligand exchange reaction. SPIONs’ presence within myoblasts was confirmed by Prussian Blue staining and inductively coupled plasma mass spectrometry (ICP-MS). SPIONs’ influence on tested cells was studied by their proliferation, ageing, differentiation potential and ROS production. Cytotoxicity of obtained nanoparticles and myoblast associated apoptosis were also tested, as well as iron-related and coating-related genes expression. We examined SPIONs’ impact on overexpression of two pro-angiogenic factors introduced via myoblast electroporation method. Proposed SPION-labeling was sufficient to visualize firefly luciferase-modified and SPION-labeled cells with magnetic resonance imaging (MRI) combined with bioluminescence imaging (BLI) in vivo. The obtained results demonstrated a limited SPIONs’ influence on treated skeletal myoblasts, not interfering with basic cell functions.

1 June 2020 in Bioprinting
Verified
Journal Article
Open access
JSJulia Anna Semba
Julia Anna Semba
AMAdam Aron Mieloch
Adam Aron Mieloch
Jakub Dalibor RybkaJakub Dalibor Rybka
Jakub Dalibor Rybka

1 October 2012 in Journal of Molecular Biology
Verified
Journal Article
Open access
MTMichael W. Traxlmayr
Michael W. Traxlmayr
CHChristoph Hasenhindl
Christoph Hasenhindl
MHMatthias Hackl
Matthias Hackl
GSGerhard Stadlmayr
Gerhard Stadlmayr
Jakub Dalibor RybkaJakub Dalibor Rybka
Jakub Dalibor Rybka
COChristian Obinger
Christian Obinger
One of the most important but still poorly understood issues in protein chemistry is the relationship between sequence and stability of proteins. Here, we present a method for analyzing the influence of each individual residue on the foldability and stability of an entire protein. A randomly mutated library of the crystallizable fragment of human immunoglobulin G class 1 (IgG1-Fc) was expressed on the surface of yeast, followed by heat incubation at 79°C and selection of stable variants that still bound to structurally specific ligands. High throughput sequencing allowed comparison of the mutation rate between the starting and selected library pools, enabling the generation of a stability landscape for the entire CH3 domain of human IgG1 at single residue resolution. Its quality was analyzed with respect to (i) the structure of IgG1-Fc, (ii) evolutionarily conserved positions and (iii) in silico calculations of the energy of unfolding of all variants in comparison with the wild-type protein. In addition, this new experimental approach allowed the assignment of functional epitopes of structurally specific ligands used for selection [Fc γ-receptor I (CD64) and anti-human CH2 domain antibody] to distinct binding regions in the CH2 domain.

10 October 2016 in The Journal of Physical Chemistry C
Verified
Journal Article
Closed access
Marcin RunowskiMarcin Runowski
Marcin Runowski
SGSzymon Goderski
Szymon Goderski
JPJan Paczesny
Jan Paczesny
MKMonika Księżopolska-Gocalska
Monika Księżopolska-Gocalska
AEAnna Ekner-Grzyb
Anna Ekner-Grzyb
SLStefan Lis
Stefan Lis

1 March 2019 in Reports of Practical Oncology and Radiotherapy
Verified
Journal Article
Closed access
Jakub Dalibor RybkaJakub Dalibor Rybka
Jakub Dalibor Rybka
Melanoma is responsible for the majority of deaths related to skin cancer. Worryingly, prognoses show an increasing number of melanoma cases each year worldwide. Radiotherapy, which is a cornerstone of cancer treatment, has proved to be useful but insufficient in melanoma management due to exceptionally high radioresistance of melanoma cells. This problem could be overcome by superparamagnetic iron oxide nanoparticles (SPIONs) used as heat mediators in magnetic hyperthermia, which not only enhance radiosensitivity, but also enable precise targeting by exploitation of their magnetic properties.