A freely available data processor for the B asic E RS & ENVISAT ( A )ATSR and M ERIS Toolbox (BEAM) was developed to retrieve atmospheric and oceanic properties above and of Case‐2 waters from Medium Resolution Imaging Spectrometer (MERIS) Level1b data. The processor was especially designed for European coastal waters and uses MERIS Level1b Top‐Of‐Atmosphere (TOA) radiances to retrieve atmospherically corrected remote sensing reflectances at the Bottom‐Of‐Atmosphere (BOA), spectral aerosol optical thicknesses (AOT) and the concentration of three water constituents, namely chlorophyll‐a (CHL), total suspended matter (TSM) and the absorption of yellow substance at 443 nm (YEL). The retrieval is based on four separate artificial neural networks which were trained on the basis of the results of extensive radiative transfer (RT) simulations by taking various atmospheric and oceanic conditions into account. The accuracy of the retrievals was acquired by comparisons with concurrent in situ ground measurements and was published in full detail elsewhere. For the remote sensing reflectance product a mean absolute percentage error (MAPE) of 18% was derived within the spectral range 412.5–708.75 nm while the accuracy of the AOT at 550 nm in terms of MAPE was calculated to be 40%. The accuracies for CHL, TSM and YEL were derived from match‐up analysis with MAPEs of 50%, 60% and 71%, respectively.

This study presents a first assessment of the Top-Of-Atmosphere (TOA) radiances measured in the visible and near-infrared (VNIR) wavelengths from PRISMA (PRecursore IperSpettrale della Missione Applicativa), the new hyperspectral satellite sensor of the Italian Space Agency in orbit since March 2019. In particular, the radiometrically calibrated PRISMA Level 1 TOA radiances were compared to the TOA radiances simulated with a radiative transfer code, starting from in situ measurements of water reflectance. In situ data were obtained from a set of fixed position autonomous radiometers covering a wide range of water types, encompassing coastal and inland waters. A total of nine match-ups between PRISMA and in situ measurements distributed from July 2019 to June 2020 were analysed. Recognising the role of Sentinel-2 for inland and coastal waters applications, the TOA radiances measured from concurrent Sentinel-2 observations were added to the comparison. The results overall demonstrated that PRISMA VNIR sensor is providing TOA radiances with the same magnitude and shape of those in situ simulated (spectral angle difference, SA, between 0.80 and 3.39; root mean square difference, RMSD, between 0.98 and 4.76 [mW m⁻² sr⁻¹ nm⁻¹]), with slightly larger differences at shorter wavelengths. The PRISMA TOA radiances were also found very similar to Sentinel-2 data (RMSD < 3.78 [mW m⁻² sr⁻¹ nm⁻¹]), and encourage a synergic use of both sensors for aquatic applications. Further analyses with a higher number of match-ups between PRISMA, in situ and Sentinel-2 data are however recommended to fully characterize the on-orbit calibration of PRISMA for its exploitation in aquatic ecosystem mapping.

Calibration and validation of satellite observations are essential and on-going tasks to ensure compliance with mission accuracy requirements. An automated above water hyperspectral radiometer significantly augmented Australia’s ability to contribute to global and regional ocean color validation and algorithm design activities. The hyperspectral data can be re-sampled for comparison with current and future sensor wavebands. The continuous spectral acquisition along the ship track enables spatial resampling to match satellite footprint. This study reports spectral comparisons of the radiometer data with Visible Infrared Imaging Radiometer Suite (VIIRS) and Moderate Resolution Imaging Spectroradiometer (MODIS)-Aqua for contrasting water types in tropical waters off northern Australia based on the standard NIR atmospheric correction implemented in SeaDAS. Consistent match-ups are shown for transects of up to 50 km over a range of reflectance values. The MODIS and VIIRS satellite reflectance data consistently underestimated the in situ spectra in the blue with a bias relative to the “dynamic above water radiance and irradiance collector” (DALEC) at 443 nm ranging from 9.8 × 10⁻⁴ to 3.1 × 10⁻³ sr⁻¹. Automated acquisition has produced good quality data under standard operating and maintenance procedures. A sensitivity analysis explored the effects of some assumptions in the data reduction methods, indicating the need for a comprehensive investigation and quantification of each source of uncertainty in the estimate of the DALEC reflectances. Deployment on a Research Vessel provides the potential for the radiometric data to be combined with other sampling and observational activities to contribute to algorithm development in the wider bio-optical research community.

The spatial and temporal variability of phytoplankton blooms was investigated in two tropical coastal regions of northern Australia using the MEdium Resolution Imaging Spectrometer (MERIS) full mission (2002–2012) reduced resolution dataset. Satellite-derived proxies for phytoplankton (Chlorophyll-a (Chl), Fluorescence Line Height (FLH), Maximum Chlorophyll Index (MCI)) and suspended sediment (Total Suspended Matter (TSM)) were jointly analyzed for two clusters of the Great Barrier Reef Wet tropics (GBRW; 15°–19.5°S; Queensland) and the Van Diemen Gulf (VDG; 9°–13°S; Northern Territory). The analysis of time-series and Hovmöller diagrams of the four MERIS products provided a unique perspective on the processes linking phytoplankton blooms and river runoff, or resuspension, across spatio-temporal scales. Both regions are characterized by a complex oceanography and seasonal inflows of sediment, freshwater and nutrients during the tropical wet season months (November to April). The GBRW is characterized by a great variability in water clarity (Secchi depth 0–25 m). A long history of agricultural land use has led to a large increase in the seasonal discharge of sediments and nutrients, triggering seasonal phytoplankton blooms (>0.4 mg∙m⁻³) between January and April. In contrast, the VDG is a poorly flushed, turbid (Secchi depth 1.0 mg∙m⁻³) than in the GBRW, occurring up to twice a year between January and April. Over the 10-year MERIS mission, a weak decline in Chl and TSM was observed for the VDG (Sen slope: −2.85%/decade, τ = −0.32 and −3.57%/decade, τ = −0.24; p 0.05), while no significant trend in those two satellite products was observed in the GBRW. Cyanobacteria surface algal blooms occur in both regions between August and October. The MCI and FLH products were found to adequately complement Chl, while TSM provided relevant insight for the assessment of sediment resuspension and river runoff.

In January 2013, tropical cyclone Oswald caused widespread flooding in the North-East coast of Australia, and large and highly episodic inputs into Princess Charlotte Bay (PCB, northern Great Barrier Reef). Freshwater outflows from the Normanby and Kennedy rivers, the two main rivers draining the adjacent catchments, resulted in drastic changes in physical, biogeochemical and optical properties within PCB. On 31 January, 2 days after the peak riverine discharge from the Normanby river, nutrients and dissolved organic matter contents peaked under the influence of large outflows from the Kennedy river into the western section of the bay (5.8 μM for dissolved inorganic nitrogen, 6.9 g m⁻³ for dissolved organic carbon and 6.1 m⁻¹ for the colored dissolved organic matter absorption coefficient at 412 nm). In the eastern section of the bay, the situation appeared more ‘mixed’, with a suspended solids concentration reaching 23.1 g m⁻³ close to the Normanby river mouth. The main phytoplankton bloom occurred in the transition zone between the Kennedy and Normanby flood plumes, and was dominated by diatoms with a chlorophyll a concentration reaching 14.6 mg m⁻³. This study highlights the need to better describe the critical spatial and temporal scales of variability of key biogeochemical and optical properties after a major flood event. The data collected is key to improve the accuracy of ocean color remote sensing algorithms and regional biogeochemical budgets following highly episodic inputs.