Roman Koning

Dr. Roman Koning

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Research Focus & Metrics

Academic Career Length

28Years (1999-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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14 March 2014 in Science
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Journal Article
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CDChristoph A. Diebolder
Christoph A. Diebolder
FBFrank J. Beurskens
Frank J. Beurskens
RJRob N. de Jong
Rob N. de Jong
RKRoman Koning
Roman Koning
KSKristin Strumane
Kristin Strumane
PPPaul W. H. I. Parren
Paul W. H. I. Parren
Hexing Complement: Complement activation is an immediate and potent immune defense mechanism, but how immunoglobulin G (IgG) antibodies activate complement at the molecular level is poorly understood. Using high-resolution crystallography, Diebolder et al. (p. 1260 ) show that human IgGs form hexameric structures by interacting with neighboring IgG molecules, and the complex then activates complement. Thus, IgG molecules and the complement system can coexist in the blood because complement activation will only be triggered after IgG senses a surface antigen and starts to aggregate.

11 September 2020 in Science
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Journal Article
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GWGeorg Wolff
Georg Wolff
RLRonald Limpens
Ronald Limpens
JZJessika C. Zevenhoven-Dobbe
Jessika C. Zevenhoven-Dobbe
ULUlrike Laugks
Ulrike Laugks
SZShawn Zheng
Shawn Zheng
MBMontserrat Bárcena
Montserrat Bárcena
Viral RNA exported from the coronavirus replication organelle is likely to be mediated by a crown-shaped molecular pore.

10 January 2018 in Science Translational Medicine
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ABAnna de Breij
Anna de Breij
Martijn RioolMartijn Riool
Martijn Riool
RCRobert A. Cordfunke
Robert A. Cordfunke
NMNermina Malanovic
Nermina Malanovic
LBLeonie de Boer
Leonie de Boer
PNPeter H. Nibbering
Peter H. Nibbering
Development of novel antimicrobial agents is a top priority in the fight against multidrug-resistant (MDR) and persistent bacteria. We developed a panel of synthetic antimicrobial and antibiofilm peptides (SAAPs) with enhanced antimicrobial activities compared to the parent peptide, human antimicrobial peptide LL-37. Our lead peptide SAAP-148 was more efficient in killing bacteria under physiological conditions in vitro than many known preclinical- and clinical-phase antimicrobial peptides. SAAP-148 killed MDR pathogens without inducing resistance, prevented biofilm formation, and eliminated established biofilms and persister cells. A single 4-hour treatment with hypromellose ointment containing SAAP-148 completely eradicated acute and established, biofilm-associated infections with methicillin-resistant Staphylococcus aureus and MDR Acinetobacter baumannii from wounded ex vivo human skin and murine skin in vivo. Together, these data demonstrate that SAAP-148 is a promising drug candidate in the battle against antibiotic-resistant bacteria that pose a great threat to human health.

1 January 2013 in Journal of Extracellular Vesicles
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Journal Article
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YYYuana Yuana
Yuana Yuana
RKRoman Koning
Roman Koning
MKMaxim E. Kuil
Maxim E. Kuil
PRPatrick C. N. Rensen
Patrick C. N. Rensen
AKAbraham J. Koster
Abraham J. Koster
SOSusanne Osanto
Susanne Osanto
Introduction: Extracellular vesicles (EV) are phospholipid bilayer‐enclosed vesicles recognized as new mediators in intercellular communication and potential biomarkers of disease. They are found in many body fluids and mainly studied in fractions isolated from blood plasma in view of their potential in medicine. Due to the limitations of available analytical methods, morphological information on EV in fresh plasma is still rather limited.Objectives: To image EV and determine the morphology, structure and size distribution in fresh plasma by cryo‐electron microscopy (cryo‐EM).Methods: Fresh citrate‐ and ethylenediaminetetraacetic acid (EDTA)‐anticoagulated plasma or EV isolated from these plasmas were rapidly cryo‐immobilized by vitrification and visualized by cryo‐EM.Results: EV isolated from fresh plasma were highly heterogeneous in morphology and size and mostly contain a discernible lipid bilayer (lipid vesicles). In fresh plasma there were 2 types of particles with a median diameter of 30 nm (25–260 nm). The majority of these particles are electron dense particles which most likely represent lipoproteins. The minority are lipid vesicles, either electron dense or electron lucent, which most likely represent EV. Lipid vesicles were occasionally observed in close proximity of platelets in citrate and EDTA‐anticoagulated platelet‐rich plasma. Cryo‐electron tomography (cryo‐ET) was employed to determine the 3D structure of platelet secretory granules.Conclusions: Cryo‐EM is a powerful technique that enables the characterization of EV in fresh plasma revealing structural details and considerable morphological heterogeneity. Only a small proportion of the submicron structures in fresh plasma are lipid vesicles representing EV.

16 February 2018 in Science
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DUDeniz Ugurlar
Deniz Ugurlar
SHStuart C. Howes
Stuart C. Howes
BKBart-Jan de Kreuk
Bart-Jan de Kreuk
RKRoman Koning
Roman Koning
RJRob N. de Jong
Rob N. de Jong
PGPiet Gros
Piet Gros
Recognizing danger signals: In the classical complement pathway, the C1 initiation complex binds to danger patterns on the surface of microbes or damaged host cells and triggers an immune response. Immunoglobulin G (IgG) antibodies form hexamers on cell surfaces that have high avidity for the C1 complex. Ugurlar et al. used cryo–electron microscopy to show how a hexamer of C1 complexes interacts with the IgG hexamer. Structure-guided mutagenesis revealed how C1 is activated to trigger an immune response. Science , this issue p. 794

26 August 2016 in Nature Communications
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Journal Article
Open access
RKRoman Koning
Roman Koning
JGJosue Gomez-Blanco
Josue Gomez-Blanco
IAInara Akopjana
Inara Akopjana
Javier VargasJavier Vargas
Javier Vargas
AKAndris Kazaks
Andris Kazaks
AKAbraham J. Koster
Abraham J. Koster
In single-stranded ribonucleic acid (RNA) viruses, virus capsid assembly and genome packaging are intertwined processes. Using cryo-electron microscopy and single particle analysis we determined the asymmetric virion structure of bacteriophage MS2, which includes 178 copies of the coat protein, a single copy of the A-protein and the RNA genome. This reveals that in situ, the viral RNA genome can adopt a defined conformation. The RNA forms a branched network of stem-loops that almost all allocate near the capsid inner surface, while predominantly binding to coat protein dimers that are located in one-half of the capsid. This suggests that genomic RNA is highly involved in genome packaging and virion assembly.