Domenico Mallamace

Dr. Domenico Mallamace

University of Messina, Messina, Italy
orcid

Research Focus & Metrics

Academic Career Length

16Years (2011-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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8 March 2016 in Proceedings of the National Academy of Sciences
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Journal Article
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Francesco MallamaceFrancesco Mallamace
Francesco Mallamace
Carmelo CorsaroCarmelo Corsaro
Carmelo Corsaro
Domenico MallamaceDomenico Mallamace
Domenico Mallamace
Sebastiano VasiSebastiano Vasi
Sebastiano Vasi
CVCirino Vasi
Cirino Vasi
H. Eugene StanleyH. Eugene Stanley
H. Eugene Stanley
We use 1H NMR to probe the energy landscape in the protein folding and unfolding process. Using the scheme <mml:math><mml:mo>⇄</mml:mo></mml:math>⇄ reversible unfolded (intermediate) <mml:math><mml:mo>→</mml:mo></mml:math>→ irreversible unfolded (denatured) state, we study the thermal denaturation of hydrated lysozyme that occurs when the temperature is increased. Using thermal cycles in the range <mml:math><mml:mrow><mml:mn>295</mml:mn><mml:mo><</mml:mo><mml:mi>T</mml:mi><mml:mo><</mml:mo><mml:mn>365</mml:mn></mml:mrow></mml:math>295<T<365 K and following different trajectories along the protein energy surface, we observe that the hydrophilic (the amide NH) and hydrophobic (methyl CH3 and methine CH) peptide groups evolve and exhibit different behaviors. We also discuss the role of water and hydrogen bonding in the protein configurational stability.

15 November 2014 in Computational and Structural Biotechnology Journal
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Journal Article
Open access
Francesco MallamaceFrancesco Mallamace
Francesco Mallamace
Carmelo CorsaroCarmelo Corsaro
Carmelo Corsaro
Domenico MallamaceDomenico Mallamace
Domenico Mallamace
Sebastiano VasiSebastiano Vasi
Sebastiano Vasi
CVCirino Vasi
Cirino Vasi
GDGiacomo Dugo
Giacomo Dugo
The role the solvent plays in determining the biological activity of proteins is of primary importance. Water is the solvent of life and proteins need at least a water monolayer covering their surface in order to become biologically active. We study how the properties of water and the effect of its coupling with the hydrophilic moieties of proteins govern the regime of protein activity. In particular we follow, by means of Fourier Transform Infrared spectroscopy, the thermal evolution of the amide vibrational modes of hydrated lysozyme in the temperature interval 180 K < T < 350 K. In such a way we are able to observe the thermal limit of biological activity characterizing hydrated lysozyme. Finally we focus on the region of lysozyme thermal denaturation by following the evolution of the proton Nuclear Magnetic Resonance (NMR) spectra for 298 K < T < 366 K with the High-Resolution Magic Angle Spinning probe. Our data suggest that the hydrogen bond coupling between hydration water and protein hydrophilic groups is crucial in triggering the main mechanisms that define the enzymatic activity of proteins.

Verified
Journal Article
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Domenico MallamaceDomenico Mallamace
Domenico Mallamace
Enza FazioEnza Fazio
Enza Fazio
Francesco MallamaceFrancesco Mallamace
Francesco Mallamace
Carmelo CorsaroCarmelo Corsaro
Carmelo Corsaro
The biological activity of proteins depends on their three-dimensional structure, known as the native state. The main force driving the correct folding mechanism is the hydrophobic effect and when this folding kinetics is altered, aggregation phenomena intervene causing the occurrence of illnesses such as Alzheimer and Parkinson’s diseases. The other important effect is performed by water molecules and by their ability to form a complex network of hydrogen bonds whose dynamics influence the mobility of protein amino acids. In this work, we review the recent results obtained by means of spectroscopic techniques, such as Fourier Transform Infrared (FTIR) and Nuclear Magnetic Resonance (NMR) spectroscopies, on hydrated lysozyme. In particular, we explore the Energy Landscape from the thermal region of configurational stability up to that of the irreversible denaturation. The importance of the coupling between the solute and the solvent will be highlighted as well as the different behaviors of hydrophilic and hydrophobic moieties of protein amino acid residues.

1 February 2015 in Physica A: Statistical Mechanics and its Applications
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Journal Article
Closed access
GDGiacomo Dugo
Giacomo Dugo
Archimede RotondoArchimede Rotondo
Archimede Rotondo
Domenico MallamaceDomenico Mallamace
Domenico Mallamace
Nicola CiceroNicola Cicero
Nicola Cicero
Andrea SalvoAndrea Salvo
Andrea Salvo
Carmelo CorsaroCarmelo Corsaro
Carmelo Corsaro

28 April 2015 in Natural Product Research
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Journal Article
Closed access
Andrea SalvoAndrea Salvo
Andrea Salvo
Nicola CiceroNicola Cicero
Nicola Cicero
RVRossella Vadalà
Rossella Vadalà
AMAntonio Francesco Mottese
Antonio Francesco Mottese
DBDaniel Bua
Daniel Bua
GDGiacomo Dugo
Giacomo Dugo
Toxic and essential metals content was determined by inductively coupled plasma mass spectrometry in commercial sea urchins samples from the Mediterranean Sea and Pacific Ocean. Results show that Chilean samples have the highest values of Cd, As, Ni, Cr and V; Spanish samples have the maximum Hg content while Sicilian samples have the lowest content of toxic metals. The toxic metal traces were compared with the limits of European Community (EC) No. 1881/2006 for bivalve molluscs. All samples exceed Pb and Cd limit levels; regarding Hg levels, only Sicilian and Sardinian samples have Hg content below the EC limits. The dietary intake of toxic and essential elements was evaluated for an adult. Furthermore, our study highlights a correlation between the toxic elements content and the marine environmental conditions of the places of origin even though only the generic FAO fishing area is specified.

30 October 2012 in Cell Biochemistry and Function
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Journal Article
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ATAgata Torre
Agata Torre
FTFrancesca Trischitta
Francesca Trischitta
Carmelo CorsaroCarmelo Corsaro
Carmelo Corsaro
Domenico MallamaceDomenico Mallamace
Domenico Mallamace
Caterina FaggioCaterina Faggio
Caterina Faggio