Engineering the electronic structure of organics through interface manipulation, particularly the interface dipole and the barriers to charge carrier injection, is of essential importance to improve organic devices. This requires the meticulous fabrication of desired organic structures by precisely controlling the interactions between molecules. The well-known principles of organic coordination chemistry cannot be applied without proper consideration of extra molecular hybridization, charge transfer and dipole formation at the interfaces. Here we identify the interplay between energy level alignment, charge transfer, surface dipole and charge pillow effect and show how these effects collectively determine the net force between adsorbed porphyrin 2H-TPP on Cu(111). We show that the forces between supported porphyrins can be altered by controlling the amount of charge transferred across the interface accurately through the relative alignment of molecular electronic levels with respect to the Shockley surface state of the metal substrate, and hence govern the self-assembly of the molecules.

Accurate pK _a values of per- and polyfluoroalkyl substances (PFAS) are urgently needed to improve predictions of their environmental fate, bioaccumulation, and removal, yet reliable experimental data remain scarce. Here, we determined the pK _a values of 10 PFAS and three short-chain fluorinated acids (MFA: 2.58 ± 0.03; DFA: 1.22 ± 0.03, TFA: 0.03 ± 0.08) using ¹⁹F and ¹H NMR-based chemical shift perturbation. Results were compared to prior experimental values, OPERA predictions (CompTox), and our COSMO-RS calculations. Measured pK _a values include PFPrA (−0.18 to −0.54), PFOA (−0.27 ± 0.18), PFBS and PFOS (< −1.85), 6:2 FTS (<0.0), GenX (−0.20 ± 0.09), NFDHA (−0.32 ± 0.18), PFMPA (−0.26 ± 0.13), and 6:2 FTUCA (2.59 ± 0.11). Across C2, C3, and C8 homologues, PFCAs exhibit pK _a values of approximately −0.2 to −0.3. Telomerization markedly reduces acidity: 5:3 FTCA (pK _a = 4.05 ± 0.04) is >10⁴-fold less acidic than PFOA, with COSMO-RS predicting similar effects from PFOS to 6:2 FTS. The dominant acidifying influence arises from CF₂ groups at C1 and C2 near COOH or SO₃H. The unusually low pK _a values for TFA, PFOA, and GenX reflect our low-MeOH, sorption-resistant NMR method. COSMO-RS consistently outperformed OPERA, underscoring the need for experimental benchmarks to improve predictive models for emerging PFAS.

The role of dipole-dipole interactions in the self-assembly of dipolar organic molecules on surfaces is investigated. As a model system, strongly dipolar model molecules, p-benzoquinonemonoimine zwitterions (ZI) of type C₆H₂(⋯ NHR)₂(⋯ O)₂ on crystalline coinage metal surfaces were investigated with scanning tunneling microscopy and first principles calculations. Depending on the substrate, the molecules assemble into small clusters, nano gratings, and stripes, as well as in two-dimensional islands. The alignment of the molecular dipoles in those assemblies only rarely assumes the lowest electrostatic energy configuration. Based on calculations of the electrostatic energy for various experimentally observed molecular arrangements and under consideration of computed dipole moments of adsorbed molecules, the electrostatic energy minimization is ruled out as the driving force in the self-assembly. The structures observed are mainly the result of a competition between chemical interactions and substrate effects. The substrate’s role in the self-assembly is to (i) reduce and realign the molecular dipole through charge donation and back donation involving both the molecular HOMO and LUMO, (ii) dictate the epitaxial orientation of the adsorbates, specifically so on Cu(111), and (iii) inhibit attractive forces between neighboring chains in the system ZI/Cu(111), which results in regularly spaced molecular gratings.

The permanent dipole of quinonoid zwitterions changes significantly when the molecules adsorb on Ag(111) and Cu(111) surfaces. STM reveals that sub-monolayers of adsorbed molecules can exhibit parallel dipole alignment on Ag(111), in strong contrast with the antiparallel ordering prevailing in the crystalline state and retrieved on Cu(111) surfaces, which minimizes the dipoles electrostatic interaction energy. DFT shows that the rearrangement of electron density upon adsorption is a result of donation from the molecular HOMO to the surface, and back donation to the LUMO with a concomitant charge transfer that effectively reduces the overall charge dipole.

Dispersion corrected Density Functional Theory calculations were employed to study the adsorption of benzenes derivatized with functional groups encompassing a large region of the activated/deactivated spectrum to the Ag(111) surface. Benzenes substituted with weak activating or deactivating groups, such as methyl and fluoro, do not have a strong preference for adsorbing to a particular site on the substrate, with the corrugations in the potential energy surface being similar to those of benzene. Strong activating (N(CH₃)₂) and deactivating (NO₂) groups, on the other hand, possess a distinct site preference. The nitrogen in the former prefers to lie above a silver atom (top site), but in the latter a hollow hexagonal-closed-packed (H_hcp) site of the Ag(111) surface is favored instead. Benzenes derivatized with classic activating groups donate electron density from their highest occupied molecular orbital to the surface, and those functionalized with deactivating groups withdraw electron density from the surface into orbitals that are unoccupied in the gas phase. For benzenes functionalized with two substituents, the groups that are strongly activating or deactivating control the site preference and the other groups assume sites that are, to a large degree, dictated by their positions on the benzene ring. The relative stabilities of the ortho, meta, and para positional isomers of disubstituted benzenes can, in some cases, be modified by adsorption to the surface.