Marco A. Ramos-Ibarra

Dr. Marco A. Ramos-Ibarra

Chemical Sciences and Engineering, Universidad Autónoma de Baja California, Tijuana, Baja California, Mexico
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Research Focus & Metrics

Academic Career Length

30Years (1997-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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1 March 2001 in Nature Biotechnology
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RSRoberto P. Stock
Roberto P. Stock
AOAlejandro Olvera
Alejandro Olvera
RSRicardo Sánchez
Ricardo Sánchez
ASAndrés Saralegui
Andrés Saralegui
Sonia ScarfìSonia Scarfì
Sonia Scarfì
AAAlejandro Alagón
Alejandro Alagón

26 January 2019 in Applied Sciences
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Journal Article
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Laura Díaz-RubioLaura Díaz-Rubio
Laura Díaz-Rubio
Rufina Hernández-MartínezRufina Hernández-Martínez
Rufina Hernández-Martínez
ACArturo Estolano Cobián
Arturo Estolano Cobián
DCDaniel Chávez
Daniel Chávez
RSRicardo Salazar-Aranda
Ricardo Salazar-Aranda
Iván CórdovaIván Córdova
Iván Córdova
Several oxidative processes are related to a wide range of human chronic and degenerative diseases, like Alzheimer’s disease, which also has been related to cholinergic processes. Therefore, search for new or improved antioxidant molecules with acetylcholinesterase activity is essential to offer alternative chemotherapeutic agents to support current drug therapies. A series of chalcone (2a–2k) and flavone (3a–3k) analogs were synthesized, characterized, and evaluated as acetylcholinesterase (AChE) inhibitors, and antioxidant agents using 1,1-diphenyl-2-picrylhydrazyl (DPPH•), 2-2′-azino-bis-(3-ethylbenzothiazoline-6-sulfonate) (ABTS•), and β-carotene/linoleic acid bleaching assay. Compounds more active were 3j and 2k in DPPH with EC50 of 1 × 10−8 and 5.4 × 10−3 μg/mL, respectively; 2g and 3i in ABTS (1.14 × 10−2 and 1.9 × 10−3 μg/mL); 2e, 2f, 3f, 2j, and 3j exceeded the α-tocopherol control in the β-carotene assay (98–99% of antioxidant activity). At acetylcholinesterase inhibition assay, flavones were more active than chalcones; the best results were compounds 2d and 3d (IC50 21.5 and 26.8 µg/mL, respectively), suggesting that the presence of the nitro group enhances the inhibitory activity. The docking of these two structures were made to understand their interactions with the AChE receptor. Although further in vivo testing must be performed, our results represent an important step towards the identification of improved antioxidants and acetylcholinesterase inhibitors.

20 August 2001 in Molecular and Biochemical Parasitology
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Journal Article
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PJPatricia Juárez
Patricia Juárez
RSRosana Sanchez-Lopez
Rosana Sanchez-Lopez
RSRoberto P. Stock
Roberto P. Stock
AOAlejandro Olvera
Alejandro Olvera
Marco A. Ramos-IbarraMarco A. Ramos-Ibarra
Marco A. Ramos-Ibarra
AAAlejandro Alagon
Alejandro Alagon

Verified
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RARosa Elena Mares Alejandre
Rosa Elena Mares Alejandre
SMSAMUEL G. MELENDEZ-LOPEZ
SAMUEL G. MELENDEZ-LOPEZ
Marco A. Ramos-IbarraMarco A. Ramos-Ibarra
Marco A. Ramos-Ibarra
Green fluorescent protein (GFP) has been widely used in several molecular and cellular biology applications, since it is remarkably stable in vitro and in vivo. Interestingly, native GFP is resistant to the most common chemical denaturants; however, a low fluorescence signal has been observed after acid-induced denaturation. Furthermore, this acid-denatured GFP has been used as substrate in studies of the folding activity of some bacterial chaperones and other chaperone-like molecules. Protein disulfide isomerase enzymes, a family of eukaryotic oxidoreductases that catalyze the oxidation and isomerization of disulfide bonds in nascent polypeptides, play a key role in protein folding and it could display chaperone activity. However, contrasting results have been reported using different proteins as model substrates. Here, we report the further application of GFP as a model substrate to study the chaperone activity of protein disulfide isomerase (PDI) enzymes. Since refolding of acid-denatured GFP can be easily and directly monitored, a simple micro-assay was used to study the effect of the molecular participants in protein refolding assisted by PDI. Additionally, the effect of a well-known inhibitor of PDI chaperone activity was also analyzed. Because of the diversity their functional activities, PDI enzymes are potentially interesting drug targets. Since PDI may be implicated in the protection of cells against ER stress, including cancer cells, inhibitors of PDI might be able to enhance the efficacy of cancer chemotherapy; furthermore, it has been demonstrated that blocking the reductive cleavage of disulfide bonds of proteins associated with the cell surface markedly reduces the infectivity of the human immunodeficiency virus. Although several high-throughput screening (HTS) assays to test PDI reductase activity have been described, we report here a novel and simple micro-assay to test the chaperone activity of PDI enzymes, which is amenable for HTS of PDI inhibitors.

1 May 1998 in Molecular and Biochemical Parasitology
Verified
Journal Article
Open access
RSRosana Sanchez-Lopez
Rosana Sanchez-Lopez
SGSocorro Gama-Castro
Socorro Gama-Castro
Marco A. Ramos-IbarraMarco A. Ramos-Ibarra
Marco A. Ramos-Ibarra
EMEnrique Merino
Enrique Merino
PLPaul M Lizardi
Paul M Lizardi
AAAlejandro Alagón
Alejandro Alagón

28 January 2015 in BioMed Research International
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Journal Article
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RARosa Elena Mares Alejandre
Rosa Elena Mares Alejandre
AMAlexis Z. Minchaca
Alexis Z. Minchaca
SVSalvador Villagrana
Salvador Villagrana
SMSAMUEL G. MELENDEZ-LOPEZ
SAMUEL G. MELENDEZ-LOPEZ
Marco A. Ramos-IbarraMarco A. Ramos-Ibarra
Marco A. Ramos-Ibarra
Protein disulfide isomerases (PDI) are eukaryotic oxidoreductases that catalyze the formation and rearrangement of disulfide bonds during folding of substrate proteins. Structurally, PDI enzymes share as a common feature the presence of at least one active thioredoxin-like domain. PDI enzymes are also involved in holding, refolding, and degradation of unfolded or misfolded proteins during stressful conditions. TheEhPDI enzyme (a 38 kDa polypeptide with two active thioredoxin-like domains) has been used as a model to gain insights into protein folding and disulfide bond formation inE. histolytica. Here, we performed a functional complementation assay, using a ΔdsbC mutant ofE. coli, to test whetherEhPDI exhibits isomerase activityin vivo. Our preliminary results showed thatEhPDI exhibits isomerase activity; however, further mutagenic analysis revealed significant differences in the functional role of each thioredoxin-like domain. Additional studies confirmed thatEhPDI protects heat-labile enzymes against thermal inactivation, extending our knowledge about its chaperone-like activity. The characterization ofEhPDI, as an oxidative folding catalyst with chaperone-like function, represents the initial step to dissect the molecular mechanisms involved in protein folding inE. histolytica.