maha sharkas

Prof. maha sharkas

Head of Electronics and Communications Dept., AAST
orcid

Research Focus & Metrics

Academic Career Length

20Years (2007-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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1 April 2021 in Computers in Biology and Medicine
Verified
Journal Article
Closed access
DRDina A. Ragab
Dina A. Ragab
Omneya AttallahOmneya Attallah
Omneya Attallah
MSmaha sharkas
maha sharkas
Jinchang RenJinchang Ren
Jinchang Ren
Stephen MarshallStephen Marshall
Stephen Marshall

12 September 2019 in Brain Sciences
Verified
Journal Article
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Omneya AttallahOmneya Attallah
Omneya Attallah
MSmaha sharkas
maha sharkas
HGHeba Gadelkarim
Heba Gadelkarim
Magnetic resonance imaging (MRI) is a common imaging technique used extensively to study human brain activities. Recently, it has been used for scanning the fetal brain. Amongst 1000 pregnant women, 3 of them have fetuses with brain abnormality. Hence, the primary detection and classification are important. Machine learning techniques have a large potential in aiding the early detection of these abnormalities, which correspondingly could enhance the diagnosis process and follow up plans. Most research focused on the classification of abnormal brains in a primary age has been for newborns and premature infants, with fewer studies focusing on images for fetuses. These studies associated fetal scans to scans after birth for the detection and classification of brain defects early in the neonatal age. This type of brain abnormality is named small for gestational age (SGA). This article proposes a novel framework for the classification of fetal brains at an early age (before the fetus is born). As far as we could know, this is the first study to classify brain abnormalities of fetuses of widespread gestational ages (GAs). The study incorporates several machine learning classifiers, such as diagonal quadratic discriminates analysis (DQDA), K-nearest neighbour (K-NN), random forest, naïve Bayes, and radial basis function (RBF) neural network classifiers. Moreover, several bagging and Adaboosting ensembles models have been constructed using random forest, naïve Bayes, and RBF network classifiers. The performances of these ensembles have been compared with their individual models. Our results show that our novel approach can successfully identify and classify numerous types of defects within MRI images of the fetal brain of various GAs. Using the KNN classifier, we were able to achieve the highest classification accuracy and area under receiving operating characteristics of 95.6% and 99% respectively. In addition, ensemble classifiers improved the results of their respective individual models.

26 October 2019 in Diagnostics
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Journal Article
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DRDina A. Ragab
Dina A. Ragab
MSmaha sharkas
maha sharkas
Omneya AttallahOmneya Attallah
Omneya Attallah
Breast cancer is one of the major health issues across the world. In this study, a new computer-aided detection (CAD) system is introduced. First, the mammogram images were enhanced to increase the contrast. Second, the pectoral muscle was eliminated and the breast was suppressed from the mammogram. Afterward, some statistical features were extracted. Next, k-nearest neighbor (k-NN) and decision trees classifiers were used to classify the normal and abnormal lesions. Moreover, multiple classifier systems (MCS) was constructed as it usually improves the classification results. The MCS has two structures, cascaded and parallel structures. Finally, two wrapper feature selection (FS) approaches were applied to identify those features, which influence classification accuracy. The two data sets (1) the mammographic image analysis society digital mammogram database (MIAS) and (2) the digital mammography dream challenge were combined together to test the CAD system proposed. The highest accuracy achieved with the proposed CAD system before FS was 99.7% using the Adaboosting of the J48 decision tree classifiers. The highest accuracy after FS was 100%, which was achieved with k-NN classifier. Moreover, the area under the curve (AUC) of the receiver operating characteristic (ROC) curve was equal to 1.0. The results showed that the proposed CAD system was able to accurately classify normal and abnormal lesions in mammogram samples.

7 January 2020 in Diagnostics
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Journal Article
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Omneya AttallahOmneya Attallah
Omneya Attallah
MSmaha sharkas
maha sharkas
HGHeba Gadelkarim
Heba Gadelkarim
The increasing rates of neurodevelopmental disorders (NDs) are threatening pregnant women, parents, and clinicians caring for healthy infants and children. NDs can initially start through embryonic development due to several reasons. Up to three in 1000 pregnant women have embryos with brain defects; hence, the primitive detection of embryonic neurodevelopmental disorders (ENDs) is necessary. Related work done for embryonic ND classification is very limited and is based on conventional machine learning (ML) methods for feature extraction and classification processes. Feature extraction of these methods is handcrafted and has several drawbacks. Deep learning methods have the ability to deduce an optimum demonstration from the raw images without image enhancement, segmentation, and feature extraction processes, leading to an effective classification process. This article proposes a new framework based on deep learning methods for the detection of END. To the best of our knowledge, this is the first study that uses deep learning techniques for detecting END. The framework consists of four stages which are transfer learning, deep feature extraction, feature reduction, and classification. The framework depends on feature fusion. The results showed that the proposed framework was capable of identifying END from embryonic MRI images of various gestational ages. To verify the efficiency of the proposed framework, the results were compared with related work that used embryonic images. The performance of the proposed framework was competitive. This means that the proposed framework can be successively used for detecting END.

28 February 2020 in Diagnostics
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Journal Article
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SHShimaa Hassan
Shimaa Hassan
Ahmad Al-KabbanyAhmad Al-Kabbany
Ahmad Al-Kabbany
MSmaha sharkas
maha sharkas
This research is concerned with malignant pulmonary nodule detection (PND) in low-dose CT scans. Due to its crucial role in the early diagnosis of lung cancer, PND has considerable potential in improving the survival rate of patients. We propose a two-stage framework that exploits the ever-growing advances in deep neural network models, and that is comprised of a semantic segmentation stage followed by localization and classification. We employ the recently published DeepLab model for semantic segmentation, and we show that it significantly improves the accuracy of nodule detection compared to the classical U-Net model and its most recent variants. Using the widely adopted Lung Nodule Analysis dataset (LUNA16), we evaluate the performance of the semantic segmentation stage by adopting two network backbones, namely, MobileNet-V2 and Xception. We present the impact of various model training parameters and the computational time on the detection accuracy, featuring a 79.1% mean intersection-over-union (mIoU) and an 88.34% dice coefficient. This represents a mIoU increase of 60% and a dice coefficient increase of 30% compared to U-Net. The second stage involves feeding the output of the DeepLab-based semantic segmentation to a localization-then-classification stage. The second stage is realized using Faster RCNN and SSD, with an Inception-V2 as a backbone. On LUNA16, the two-stage framework attained a sensitivity of 96.4%, outperforming other recent models in the literature, including deep models. Finally, we show that adopting a transfer learning approach, particularly, the DeepLab model weights of the first stage of the framework, to infer binary (malignant-benign) labels on the Kaggle dataset for pulmonary nodules achieves a classification accuracy of 95.66%, which represents approximately 4% improvement over the recent literature.

19 October 2020 in PeerJ Computer Science
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Journal Article
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SEShimaa El-Bana
Shimaa El-Bana
Ahmad Al-KabbanyAhmad Al-Kabbany
Ahmad Al-Kabbany
MSmaha sharkas
maha sharkas
We are concerned with the challenge of coronavirus disease (COVID-19) detection in chest X-ray and Computed Tomography (CT) scans, and the classification and segmentation of related infection manifestations. Even though it is arguably not an established diagnostic tool, using machine learning-based analysis of COVID-19 medical scans has shown the potential to provide a preliminary digital second opinion. This can help in managing the current pandemic, and thus has been attracting significant research attention. In this research, we propose a multi-task pipeline that takes advantage of the growing advances in deep neural network models. In the first stage, we fine-tuned an Inception-v3 deep model for COVID-19 recognition using multi-modal learning, that is, using X-ray and CT scans. In addition to outperforming other deep models on the same task in the recent literature, with an attained accuracy of 99.4%, we also present comparative analysis for multi-modal learning against learning from X-ray scans alone. The second and the third stages of the proposed pipeline complement one another in dealing with different types of infection manifestations. The former features a convolutional neural network architecture for recognizing three types of manifestations, while the latter transfers learning from another knowledge domain, namely, pulmonary nodule segmentation in CT scans, to produce binary masks for segmenting the regions corresponding to these manifestations. Our proposed pipeline also features specialized streams in which multiple deep models are trained separately to segment specific types of infection manifestations, and we show the significant impact that this framework has on various performance metrics. We evaluate the proposed models on widely adopted datasets, and we demonstrate an increase of approximately 2.5% and 4.5% for dice coefficient and mean intersection-over-union (mIoU), respectively, while achieving 60% reduction in computational time, compared to the recent literature.