The morphological development of the leaf greatly influences plant architecture and crop yields. The maize leaf is composed of a leaf blade, ligule and sheath. Although extensive transcriptional profiling of the tissues along the longitudinal axis of the developing maize leaf blade has been conducted, little is known about the transcriptional dynamics in sheath tissues, which play important roles in supporting the leaf blade. Using a comprehensive transcriptome dataset, we demonstrated that the leaf sheath transcriptome dynamically changes during maturation, with the construction of basic cellular structures at the earliest stages of sheath maturation with a transition to cell wall biosynthesis and modifications. The transcriptome again changes with photosynthesis and lignin biosynthesis at the last stage of sheath tissue maturation. The different tissues of the maize leaf are highly specialized in their biological functions and we identified 15 genes expressed at significantly higher levels in the leaf sheath compared with their expression in the leaf blade, including the BOP2 homologs GRMZM2G026556 and GRMZM2G022606, DOGT1 (GRMZM2G403740) and transcription factors from the B3 domain, C2H2 zinc finger and homeobox gene families, implicating these genes in sheath maturation and organ specialization.

As a medicinal and edible plant, basil (Ocimum basilicum Linn. var. pilosum (Willd.) Benth.) has rich nutrition and significant economic value. The increase in heat stress caused by global warming adversely affects the growth and yield of plants. However, the response mechanism of basil to heat stress is poorly understood. This work investigated the changes in phenotype, metabolome, and transcriptome in basil under heat stress. The results showed that heat stress triggered severe oxidative damage and photosynthesis inhibition in basil. Metabonomic analysis showed that, compared to the control group, 29 significantly differentially accumulated metabolites (DAMs) were identified after 1 d of heat treatment, and 37 DAMs after the treatment of 3 d. The DAMs were significantly enriched by several pathways such as glycolysis or gluconeogenesis; aminoacyl-tRNA biosynthesis; and alanine, aspartate, and glutamate metabolism. In addition, transcriptomic analysis revealed that 15,066 and 15,445 genes were differentially expressed after 1 d and 3 d of heat treatment, respectively. Among them, 11,183 differentially expressed genes (DEGs) were common response genes under 1 d and 3 d heat treatment, including 5437 down-regulated DEGs and 6746 up-regulated DEGs. All DEGs were significantly enriched in various KEGG (Kyoto Encyclopedia of Genes and Genomes) pathways, most dominated by glyoxylate and dicarboxylate metabolism, followed by starch and sucrose metabolism, and by the biosynthesis and metabolism of other secondary metabolites. Overall, all the above results provided some valuable insights into the molecular mechanism of basil in response to heat stress.