Shaker EL-Sappagh

Dr. Shaker EL-Sappagh

Department of Information and Communication Engineering, Inha University, Incheon, Korea
orcid

Research Focus & Metrics

Academic Career Length

11Years (2016-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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29 January 2021 in Scientific Reports
Verified
Journal Article
Open access
PDF file
SEShaker EL-Sappagh
Shaker EL-Sappagh
JAJose M. Alonso
Jose M. Alonso
S. IslamS. Islam
S. Islam
ASAhmad M. Sultan
Ahmad M. Sultan
KKKyung Sup Kwak
Kyung Sup Kwak
Alzheimer’s disease (AD) is the most common type of dementia. Its diagnosis and progression detection have been intensively studied. Nevertheless, research studies often have little effect on clinical practice mainly due to the following reasons: (1) Most studies depend mainly on a single modality, especially neuroimaging; (2) diagnosis and progression detection are usually studied separately as two independent problems; and (3) current studies concentrate mainly on optimizing the performance of complex machine learning models, while disregarding their explainability. As a result, physicians struggle to interpret these models, and feel it is hard to trust them. In this paper, we carefully develop an accurate and interpretable AD diagnosis and progression detection model. This model provides physicians with accurate decisions along with a set of explanations for every decision. Specifically, the model integrates 11 modalities of 1048 subjects from the Alzheimer’s Disease Neuroimaging Initiative (ADNI) real-world dataset: 294 cognitively normal, 254 stable mild cognitive impairment (MCI), 232 progressive MCI, and 268 AD. It is actually a two-layer model with random forest (RF) as classifier algorithm. In the first layer, the model carries out a multi-class classification for the early diagnosis of AD patients. In the second layer, the model applies binary classification to detect possible MCI-to-AD progression within three years from a baseline diagnosis. The performance of the model is optimized with key markers selected from a large set of biological and clinical measures. Regarding explainability, we provide, for each layer, global and instance-based explanations of the RF classifier by using the SHapley Additive exPlanations (SHAP) feature attribution framework. In addition, we implement 22 explainers based on decision trees and fuzzy rule-based systems to provide complementary justifications for every RF decision in each layer. Furthermore, these explanations are represented in natural language form to help physicians understand the predictions. The designed model achieves a cross-validation accuracy of 93.95% and an F1-score of 93.94% in the first layer, while it achieves a cross-validation accuracy of 87.08% and an F1-Score of 87.09% in the second layer. The resulting system is not only accurate, but also trustworthy, accountable, and medically applicable, thanks to the provided explanations which are broadly consistent with each other and with the AD medical literature. The proposed system can help to enhance the clinical understanding of AD diagnosis and progression processes by providing detailed insights into the effect of different modalities on the disease risk.

29 March 2021 in Diagnostics
Verified
Journal Article
Open access
PDF file
Nora mahmoudNora mahmoud
Nora mahmoud
SEShaker EL-Sappagh
Shaker EL-Sappagh
S. IslamS. Islam
S. Islam
HEHazem M. El-Bakry
Hazem M. El-Bakry
SASamir Abdelrazek
Samir Abdelrazek
Chronic diseases are becoming more widespread. Treatment and monitoring of these diseases require going to hospitals frequently, which increases the burdens of hospitals and patients. Presently, advancements in wearable sensors and communication protocol contribute to enriching the healthcare system in a way that will reshape healthcare services shortly. Remote patient monitoring (RPM) is the foremost of these advancements. RPM systems are based on the collection of patient vital signs extracted using invasive and noninvasive techniques, then sending them in real-time to physicians. These data may help physicians in taking the right decision at the right time. The main objective of this paper is to outline research directions on remote patient monitoring, explain the role of AI in building RPM systems, make an overview of the state of the art of RPM, its advantages, its challenges, and its probable future directions. For studying the literature, five databases have been chosen (i.e., science direct, IEEE-Explore, Springer, PubMed, and science.gov). We followed the (Preferred Reporting Items for Systematic Reviews and Meta-Analyses) PRISMA, which is a standard methodology for systematic reviews and meta-analyses. A total of 56 articles are reviewed based on the combination of a set of selected search terms including RPM, data mining, clinical decision support system, electronic health record, cloud computing, internet of things, and wireless body area network. The result of this study approved the effectiveness of RPM in improving healthcare delivery, increase diagnosis speed, and reduce costs. To this end, we also present the chronic disease monitoring system as a case study to provide enhanced solutions for RPMs.

3 April 2020 in IEEE Access
Verified
Journal Article
Open access
PPPijush Kanti Dutta Pramanik
Pijush Kanti Dutta Pramanik
Arun SolankiArun Solanki
Arun Solanki
ADAbhinaba Debnath
Abhinaba Debnath
Anand NayyarAnand Nayyar
Anand Nayyar
SEShaker EL-Sappagh
Shaker EL-Sappagh
KKKyung Sup Kwak
Kyung Sup Kwak
Healthcare sector is probably the most benefited from the applications of nanotechnology. The nanotechnology, in the forms of nanomedicine, nanoimplants, nanobiosensors along with the internet of nano things (IoNT), has the potential to bring a revolutionizing advancement in the field of medicine and healthcare services. The primary aim of this paper is to explore the clinical and medical possibilities of these different implementations of nanotechnology. This paper provides a comprehensive overview of nanotechnology, biosensors, nanobiosensors, and IoNT. Furthermore, multilevel taxonomies of nanotechnology, nanoparticles, biosensors, nanobiosensors, and nanozymes are presented. The potential medical and clinical applications of these technologies are discussed in details with several examples. This paper specifically focuses on IoNT and its role in healthcare. In addition to describing a general architecture of IoNT for healthcare, the communication architecture of the IoNT is also explained. The challenges in the successful realization of IoNT are also discussed critically, along with a special discussion on internet of bio-nano things (IoBNT) and its potential in making IoNT more compatible to human body.

23 October 2023 in IEEE Access
Verified
Journal Article
Open access
WNWaleed Nazih
Waleed Nazih
AAAhmad O. Aseeri
Ahmad O. Aseeri
OAOsama Hassan Youssef Atallah
Osama Hassan Youssef Atallah
SEShaker EL-Sappagh
Shaker EL-Sappagh
Diabetic Retinopathy (DR) is a result of prolonged diabetes with poor blood sugar management. It causes vision problems and blindness due to the deformation of the human retina. Recently, DR has become a crucial medical problem that affects the health and life of people. Diagnosis of DR can be done manually by ophthalmologists, but this is cumbersome and time consuming especially in the current overloaded physician’s environment. The early detection and prevention of DR, a severe complication of diabetes that can lead to blindness, require an automatic, accurate, and personalized machine learning-based method. Various deep learning algorithms, particularly convolutional neural networks (CNNs), have been investigated for detecting different stages of DR. Recently, transformers have proved their capabilities in natural language processing. Vision transformers (ViTs) are extensions of these models to capture long-range dependencies in images, which achieved better results than CNN models. However, ViT always needs huge datasets to learn properly, and this condition reduced its applicability in DR domain. Recently, a new real-world and large fundus image dataset called fine-grained annotated diabetic retinopathy (FGADR) has been released which supported the application of ViT in DR diagnosis domain. The literature has not explored FGADR to optimize ViT models. In this paper, we propose a novel ViT based deep learning pipeline for detecting the severity stages of DR based on fundus photography-based retina images. The model has been built using FGADR dataset. The model has been optimized using a new optimizer called AdamW to detect the global context of images. Because FGADR is an imbalanced dataset, we combine several techniques for handling this issue including the usage of F1-score as the optimization metric, data augmentation, class weights, label smoothing, and focal loss. Extensive experiments have been conducted to explore the role of ViT with different data balancing techniques to detect DR. In addition, the proposed model has been compared with the state-of-the-art CNN algorithms such as ResNet50, Incep-tionV3, and VGG19. The adopted model was able to capture the crucial features of retinal images to understand DR severity better. It achieved superior results compared to other CNN and baseline ViT models (i.e., 0.825, 0.825, 0.826, 0.964, 0.825, 0.825, and 0.956 for F1-score, accuracy, balanced accuracy, AUC, precision, recall, specificity, respectively). The results of the proposed ViT model were quite encouraging to be applied in real medical environment for assisting physicians to make accurate, personalized, and timely decisions.

21 April 2023 in Diagnostics
Verified
Journal Article
Open access
PDF file
HEHela Elmannai
Hela Elmannai
Nora mahmoudNora mahmoud
Nora mahmoud
IMIbrahim Mashal
Ibrahim Mashal
MAManal Alohaly
Manal Alohaly
SAsara abd-elghany
sara abd-elghany
HSHager Saleh
Hager Saleh
Polycystic ovary syndrome (PCOS) has been classified as a severe health problem common among women globally. Early detection and treatment of PCOS reduce the possibility of long-term complications, such as increasing the chances of developing type 2 diabetes and gestational diabetes. Therefore, effective and early PCOS diagnosis will help the healthcare systems to reduce the disease’s problems and complications. Machine learning (ML) and ensemble learning have recently shown promising results in medical diagnostics. The main goal of our research is to provide model explanations to ensure efficiency, effectiveness, and trust in the developed model through local and global explanations. Feature selection methods with different types of ML models (logistic regression (LR), random forest (RF), decision tree (DT), naive Bayes (NB), support vector machine (SVM), k-nearest neighbor (KNN), xgboost, and Adaboost algorithm to get optimal feature selection and best model. Stacking ML models that combine the best base ML models with meta-learner are proposed to improve performance. Bayesian optimization is used to optimize ML models. Combining SMOTE (Synthetic Minority Oversampling Techniques) and ENN (Edited Nearest Neighbour) solves the class imbalance. The experimental results were made using a benchmark PCOS dataset with two ratios splitting 70:30 and 80:20. The result showed that the Stacking ML with REF feature selection recorded the highest accuracy at 100 compared to other models.
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1 February 2021 in Knowledge-Based Systems
Verified
Journal Article
Closed access
Tamer ABUHMEDTamer ABUHMED
Tamer ABUHMED
SEShaker EL-Sappagh
Shaker EL-Sappagh
JAJose M. Alonso
Jose M. Alonso