Cold stress is regarded as a key factor limiting widespread use for bermudagrass (Cynodon dactylon). Therefore, to improve cold tolerance for bermudagrass, it is urgent to understand molecular mechanisms of bermudagrass response to cold stress. However, our knowledge about the molecular responses of this species to cold stress is largely unknown. The objective of this study was to characterize the transcriptomic response to low temperature in bermudagrass by using RNA-Seq platform. Ten cDNA libraries were generated from RNA samples of leaves from five different treatments in the cold-resistant (R) and the cold-sensitive (S) genotypes, including 4 °C cold acclimation (CA) for 24 h and 48 h, freezing (−5 °C) treatments for 4 h with or without prior CA, and controls. When subjected to cold acclimation, global gene expressions were initiated more quickly in the R genotype than those in the S genotype. The R genotype activated gene expression more effectively in response to freezing temperature after 48 h CA than the S genotype. The differentially expressed genes were identified as low temperature sensing and signaling-related genes, functional proteins and transcription factors, many of which were specifically or predominantly expressed in the R genotype under cold treatments, implying that these genes play important roles in the enhanced cold hardiness of bermudagrass. KEGG pathway enrichment analysis for DEGs revealed that photosynthesis, nitrogen metabolism and carbon fixation pathways play key roles in bermudagrass response to cold stress. The results of this study may contribute to our understanding the molecular mechanism underlying the responses of bermudagrass to cold stress, and also provide important clues for further study and in-depth characterization of cold-resistance breeding candidate genes in bermudagrass.

Background: It has been reported that nitric oxide (NO) could ameliorate cadmium (Cd) toxicity in tall fescue; however, the underlying mechanisms of NO mediated Cd detoxification are largely unknown. In this study, we investigated the possible molecular mechanisms of Cd detoxification process by comparative transcriptomic and metabolomic approaches. Results: The application of Sodium nitroprusside (SNP) as NO donor decreased the Cd content of tall fescue by 11% under Cd stress (T1 treatment), but the Cd content was increased by 24% when treated with Carboxy-PTIO (c-PTIO) together with Nitro-L-arginine methyl ester (L-NAME) (T2 treatment). RNA-seq analysis revealed that 904 (414 up- and 490 down-regulated) and 118 (74 up- and 44 down-regulated) DEGs were identified in the T1 vs Cd (only Cd treatment) and T2 vs Cd comparisons, respectively. Moreover, metabolite profile analysis showed that 99 (65 up- and 34-down- regulated) and 131 (45 up- and 86 down-regulated) metabolites were altered in the T1 vs Cd and T2 vs Cd comparisons, respectively. The integrated analyses of transcriptomic and metabolic data showed that 81 DEGs and 15 differentially expressed metabolites were involved in 20 NO-induced pathways. The dominant pathways were antioxidant activities such as glutathione metabolism, arginine and proline metabolism, secondary metabolites such as flavone and flavonol biosynthesis and phenylpropanoid biosynthesis, ABC transporters, and nitrogen metabolism. Conclusions: In general, the results revealed that there are three major mechanisms involved in NO-mediated Cd detoxification in tall fescue, including (a) antioxidant capacity enhancement; (b) accumulation of secondary metabolites related to cadmium chelation and sequestration; and (c) regulation of cadmium ion transportation, such as ABC transporter activation. In conclusion, this study provides new insights into the NO-mediated cadmium stress response.

Straw return plays an important role in the improvement of farmland ecological environments, increasing soil fertility, crop quality, and yield. However, in the early growth of rice (Oryza sativa L.), straw decomposition and rice growth may be inhibited by suboptimal carbon/nitrogen (C/N) ratios. We, therefore, explored methods that could alleviate the inhibition of straw decomposition using different combinations of ammonium bicarbonate and compound fertilizer. No fertilizer (CK) and compound fertilizer (S0) were used as the control. The ratios of added ammonium bicarbonate were 10% (S1), 20% (S2), 30% (S3), and 40% (S4), respectively. Compared with the S0 treatment, the S2 treatment accelerated straw decomposition, promoted the early growth of tillers and roots, and improved the leaf area index, dry matter accumulation, and N use efficiency (apparent N utilization, agronomic N utilization, and partial factor productivity increased by 4.05‒19.48% in two years). Moreover, panicle number, filled‐grain percentage, and 1000‐grain weight were significantly higher in the S2 treatment than other treatments. The grain yield of S2 treatment was significantly higher than that of S0 treatment by 4.06% (2019) and 5.66% (2020). Regression analysis revealed that the optimal ratios of ammonium bicarbonate for increasing straw decomposition and grain yield were relatively close, 16.27% and 14.60%, respectively. These results suggest that compared with conventional fertilization method (S0), the 20% treatment is a more effective fertilization method that prevents inhibition of straw decomposition, promoting rice growth and yield, and improving nitrogen (N) use efficiency.

Cold stress is one of the major abiotic stresses that limits the growth and development of plants. Improving the cold tolerance of plants is essential to enhance crop productivity in the changing environment. OPEN STOMATA 1 (OST1), also known as sucrose non-fermenting 1 related protein kinases 2.6/2E (SnRK2.6/SnRK2E), has been reported to involved in cold stress response in plants. This interesting protein is confined to expressed in guard cells and vascular system. However, the detailed mechanism of how OST1 regulates cold stress, especially at the metabolomic level is largely unknown. In this study, metabolomic profiling of ost1 mutant and WT Arabidopsis plants under cold stress was investigated. The results showed that ost1-4 mutants displayed cold sensitive phenotypes compared with the WT plant, as evidenced by higher MDA content and electrolyte leakage and lower photosynthetic characteristics. Next, the metabolic changes between ost1-4 and WT plants in response to cold stress was analyzed by using the GC-TOF-MS system. The results showed that numbers of metabolites were identified to be related to OST1 regulated cold stress response. A large portion of the metabolites were carbohydrates and organic acids. The KEGG enrichment analysis revealed that the alanine, aspartate and glutamate metabolism, cyanoamino acid metabolism and citrate cycle (TCA cycle) were presumptive pathways that most related to OST1 regulated cold stress response. Gene expression such as AtGDHs, AtPPC1 and AtAK1 was also in line with the metabolic changes in the presumed pathways. Overall, this study provides fundamental knowledge for understanding the underlying metabolic mechanisms of OST1 mediated cold stress response in plants.

Soil salinization threatens agriculture by inducing osmotic stress, ion toxicity, and oxidative damage. SnRK2 genes are involved in plant stress responses, but their roles in salt stress response regulation of tobacco remain unclear. Through genome-wide analysis, we identified 54 SnRK2 genes across four Nicotiana species (N. tabacum, N. benthamiana, N. sylvestris, and N. tomentosiformis). Phylogenetic reconstruction clustered these genes into five divergent groups, revealing lineage-specific expansion in diploid progenitors (N. tomentosiformis) versus polyploidy-driven gene loss in N. tabacum. In silico promoter analysis uncovered regulatory networks involving light, hormones, stress, and developmental signals, with prevalent ABA-responsive elements (ABREs) supporting conserved stress-adaptive roles. Structural analysis highlighted functional diversification through variations in intron–exon architecture and conserved kinase motifs. This study provides a genomic atlas of SnRK2 evolution in Nicotiana, offering a foundation for engineering salt-tolerant crops.