Silvia Hernández-Ainsa

Dr. Silvia Hernández-Ainsa

Institute of Nanoscience of Aragon, University of Zaragoza, 50018 Zaragoza, Spain;
+2
orcid

Research Focus & Metrics

Academic Career Length

17Years (2010-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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22 April 2013 in ACS Nano
Verified
Journal Article
Closed access
WLWenhong Li
Wenhong Li
NBNicholas A. W. Bell
Nicholas A. W. Bell
SHSilvia Hernández-Ainsa
Silvia Hernández-Ainsa
VTVivek Vijay Thacker
Vivek Vijay Thacker
ATAlana M Thackray
Alana M Thackray
UKUlrich F. Keyser
Ulrich F. Keyser

4 June 2013 in ACS Nano
Verified
Journal Article
Closed access
SHSilvia Hernández-Ainsa
Silvia Hernández-Ainsa
NBNicholas A. W. Bell
Nicholas A. W. Bell
VTVivek Vijay Thacker
Vivek Vijay Thacker
KGKerstin Göpfrich
Kerstin Göpfrich
KMKarolis Misiunas
Karolis Misiunas
UKUlrich F. Keyser
Ulrich F. Keyser

27 March 2015 in Nano Letters
Verified
Journal Article
Closed access
KGKerstin Göpfrich
Kerstin Göpfrich
TZThomas Zettl
Thomas Zettl
AMAnna E. C. Meijering
Anna E. C. Meijering
SHSilvia Hernández-Ainsa
Silvia Hernández-Ainsa
SKSamet Kocabey
Samet Kocabey
UKUlrich F. Keyser
Ulrich F. Keyser

30 January 2015 in ACS Nano
Verified
Journal Article
Open access
CLChen-Yu Li
Chen-Yu Li
EHElisa A. Hemmig
Elisa A. Hemmig
JKJinglin Kong
Jinglin Kong
JYJejoong Yoo
Jejoong Yoo
SHSilvia Hernández-Ainsa
Silvia Hernández-Ainsa
AAAleksei Aksimentiev
Aleksei Aksimentiev
The DNA origami technique can enable functionalization of inorganic structures for single-molecule electric current recordings. Experiments have shown that several layers of DNA molecules, a DNA origami plate, placed on top of a solid-state nanopore is permeable to ions. Here, we report a comprehensive characterization of the ionic conductivity of DNA origami plates by means of all-atom molecular dynamics (MD) simulations and nanocapillary electric current recordings. Using the MD method, we characterize the ionic conductivity of several origami constructs, revealing the local distribution of ions, the distribution of the electrostatic potential and contribution of different molecular species to the current. The simulations determine the dependence of the ionic conductivity on the applied voltage, the number of DNA layers, the nucleotide content and the lattice type of the plates. We demonstrate that increasing the concentration of Mg2+ ions makes the origami plates more compact, reducing their conductivity. The conductance of a DNA origami plate on top of a solid-state nanopore is determined by the two competing effects: bending of the DNA origami plate that reduces the current and separation of the DNA origami layers that increases the current. The latter is produced by the electro-osmotic flow and is reversible at the time scale of a hundred nanoseconds. The conductance of a DNA origami object is found to depend on its orientation, reaching maximum when the electric field aligns with the direction of the DNA helices. Our work demonstrates feasibility of programming the electrical properties of a self-assembled nanoscale object using DNA.

3 November 2017 in Angewandte Chemie International Edition
Verified
Journal Article
Open access
PDF file
CHCally Haynes
Cally Haynes
JZJinbo Zhu
Jinbo Zhu
CCCatalin Chimerel
Catalin Chimerel
SHSilvia Hernández-Ainsa
Silvia Hernández-Ainsa
IRImogen A. Riddell
Imogen A. Riddell
JNJonathan R. Nitschke
Jonathan R. Nitschke
Metal–organic anion channels based on Zn10L15 pentagonal prisms have been prepared by subcomponent self‐assembly. The insertion of these prisms into lipid membranes was investigated by ion‐current and fluorescence measurements. The channels were found to mediate the transport of Cl− anions through planar lipid bilayers and into vesicles. Tosylate anions were observed to bind and plug the central channels of the prisms in the solid state and in solution. In membranes, dodecyl sulfate blocked chloride transport through the central channel. Our Zn10L15 prism thus inserts into lipid bilayers to turn on anion transport, which can then be turned off through addition of the blocker dodecyl sulfate.

7 October 2014 in Nanoscale
Verified
Journal Article
Closed access
PDF file
SHSilvia Hernández-Ainsa
Silvia Hernández-Ainsa
UKUlrich F. Keyser
Ulrich F. Keyser
DNA nanotechnology has enabled the construction of DNA origami nanopores; synthetic nanopores that present improved capabilities for the area of single molecule detection. Their extraordinary versatility makes them a new and powerful tool in nanobiotechnology for a wide range of important applications beyond molecular sensing. In this review, we briefly present the recent developments in this emerging field of research. We discuss the current challenges and possible solutions that would enhance the sensing capabilities of DNA origami nanopores. Finally, we anticipate novel avenues for future research and highlight a range of exciting ideas and applications that could be explored in the near future.