José Javier Martín Gómez

Dr. José Javier Martín Gómez

Servicio de Microscopia del IRNASA-CSIC
orcid

Research Focus & Metrics

Academic Career Length

17Years (2010-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

View All Publications
18 July 2019 in Agronomy
Verified
Journal Article
Open access
PDF file
JGJosé Javier Martín Gómez
José Javier Martín Gómez
ARAgnieszka Rewicz
Agnieszka Rewicz
KGKlaudia Goriewa-Duba
Klaudia Goriewa-Duba
MWMarian Wiwart
Marian Wiwart
ATAngel Tocino
Angel Tocino
Emilio CervantesEmilio Cervantes
Emilio Cervantes
Modern automated and semi-automated methods of shape analysis depart from the coordinates of the points in the outline of a figure and obtain, based on artificial vision algorithms, descriptive parameters (i.e., the length, width, area, and circularity index). These methods omit an important factor: the resemblance of the examined images to a geometric figure. We have described a method based on the comparison of the outline of seed images with geometric figures. The J index is the percentage of similarity between a seed image and a geometric figure used as a model. This allows the description and classification of wheat kernels based on their similarity to geometric models. The figures used are the ellipse and the lens of different major/minor axis ratios. Kernels of different species, subspecies and varieties of wheat adjust to different figures. A relationship is found between their ploidy levels and morphological type. Kernels of diploid einkorn and ancient tetraploid emmer varieties adjust to the lens and have curvature values in their poles superior to modern “bread” varieties. Kernels of modern varieties (hexaploid common wheat) adjust to an ellipse of aspect ratio = 1.6, while varieties of tetraploid durum and Polish wheat and hexaploid spelt adjust to an ellipse of aspect ratio = 2.4.

1 January 2013 in Acta Biologica Cracoviensia s. Botanica
Verified
Journal Article
Open access
PDF file
ESEzzeddine Saadaoui
Ezzeddine Saadaoui
JGJosé Javier Martín Gómez
José Javier Martín Gómez
Emilio CervantesEmilio Cervantes
Emilio Cervantes
Morphological description of seeds is a required step for analysis of biodiversity in natural populations and may give clues to adaptive strategies in species evolution. A cardioid is the curve described by a point of one circumference rolling around another circumference of equal radius. Models based on adjustment of seed shape with cardioid curves have been described for Arabidopsis thaliana and the model legumes Lotus japonicus and Medicago truncatula. In this work the model is applied to analyze seed morphology in populations of two subspecies of Capparis spinosa growing in Tunisia. Adjustment of seed images to cardioid curves, followed by statistical analysis of similarity in the complete images as well as in each of four quadrants, allows an accurate description of seed shape. The results show differences in morphology between subspecies. Seeds of subsp. rupestris present higher diversity of shape than seeds of subsp. spinosa. This may indicate primitiveness of C. subsp. rupestris seeds, associated with nonspecialization. The results are discussed in relation to the ecological strategies of both subspecies in their evolution.

1 March 2010 in Journal of Plant Physiology
Verified
Journal Article
Closed access
Emilio CervantesEmilio Cervantes
Emilio Cervantes
JGJosé Javier Martín Gómez
José Javier Martín Gómez
RARamón Ardanuy
Ramón Ardanuy
JDJuana G de Diego
Juana G de Diego
ÁTÁngel Tocino
Ángel Tocino

19 August 2019 in Horticulturae
Verified
Journal Article
Open access
PDF file
Emilio CervantesEmilio Cervantes
Emilio Cervantes
JGJosé Javier Martín Gómez
José Javier Martín Gómez
Modern methods of image analysis are based on the coordinates of the points making the silhouette of an image and allow the comparison between seed shape in different species and varieties. Nevertheless, these methods miss an important reference point because they do not take into consideration the similarity of seeds with geometrical figures. We propose a method based on the comparison of the bi-dimensional images of seeds with geometric figures. First, we describe six geometric figures that may be used as models for shape description and quantification and later on, we give an overview with examples of some of the types of seed morphology in angiosperms including families of horticultural plants and addressing the question of how is the distribution of seed shape in these families. The relationship between seed shape and other characteristics of plant species is discussed.

10 April 2021 in Agronomy
Verified
Journal Article
Open access
PDF file
Emilio CervantesEmilio Cervantes
Emilio Cervantes
JGJosé Javier Martín Gómez
José Javier Martín Gómez
Francisco Emmanuel Espinosa-RoldánFrancisco Emmanuel Espinosa-Roldán
Francisco Emmanuel Espinosa-Roldán
GMGregorio Muñoz-Organero
Gregorio Muñoz-Organero
ATAngel Tocino
Angel Tocino
FMFélix Cabello Sáenz de Santa María
Félix Cabello Sáenz de Santa María
Ampelography, the botanical discipline dedicated to the identification and classification of grapevine cultivars, was grounded on the description of morphological characters and more recently is based on the application of DNA polymorphisms. New methods of image analysis may help to optimize morphological approaches in ampelography. The objective of this study was the classification of representative cultivars of Vitis vinifera conserved in the Spanish collection of IMIDRA according to seed shape. Thirty eight cultivars representing the diversity of this collection were analyzed. A consensus seed silhouette was defined for each cultivar representing the geometric figure that better adjusted to their seed shape. All the cultivars tested were classified in ten morphological groups, each corresponding to a new model. The models are geometric figures defined by equations and similarity to each model is evaluated by quantification of percent of the area shared by the two figures, the seed and the model (J index). The comparison of seed images with geometric models is a rapid and convenient method to classify cultivars. A large proportion of the collection may be classified according to the new models described and the method permits to find new models according to seed shape in other cultivars.

1 September 2012 in Journal of Plant Physiology
Verified
Journal Article
Closed access
Emilio CervantesEmilio Cervantes
Emilio Cervantes
JGJosé Javier Martín Gómez
José Javier Martín Gómez
PCPick Kuen Chan
Pick Kuen Chan
PGPeter M. Gresshoff
Peter M. Gresshoff
ÁTÁngel Tocino
Ángel Tocino