Investigating the impacts of rock composition on pore structure is of great significance to understand shale gas occurrence and gas accumulation mechanism. Shale samples from over-mature Niutitang formation of Lower Cambrian in south China were measured by X-ray diffraction (XRD), field emission scanning electron microscopy (FE-SEM), low pressure N₂ and CO₂ adsorption to elucidate the controls of distinct mineral composition on pore development. Two distinct lithofacies, namely siliceous shale and argillaceous shale, were ascertained based on their mineral composition. Due to the variability of mineral composition in different lithofacies, pore structure characteristics are not uniform. Pores in siliceous shales are dominated by interparticle pores and organic matter (OM) pores, among which the interparticle pores are mainly developed between authigenic quartz. Furthermore, most of these interparticle pores and cleavage-sheet intraparticle pores within clay minerals are usually filled by amorphous organic matter that is host to OM pores. Due to the lack of rigid minerals, argillaceous shale was cemented densely, resulting in few interparticle pores, while cleavage-sheet intraparticle pores within clay minerals are common. Comparing siliceous shales with argillaceous shales, specific surface areas and pore volumes are higher on the former than on the latter. The content of total organic carbon (TOC) and authigenic quartz have a great influence on micropore structures, but less on mesopore structure for siliceous shales. The rigid framework structure formed by authigenic quartz is believed to be able to prevent primary interparticle pores from mechanical compaction and facilitate the formation of organic matter-associated pores. In terms of argillaceous shales, due to the lack of authigenic quartz, interparticle pores were rarely developed and its pore structure is mainly controlled by illite content.