Inland waters, including lakes, are one of the key points of the carbon cycle. Using remote sensing data in lake monitoring has advantages in both temporal and spatial coverage over traditional in-situ methods that are time consuming and expensive. In this study, we compared two sensors on different Copernicus satellites: Multispectral Instrument (MSI) on Sentinel-2 and Ocean and Land Color Instrument (OLCI) on Sentinel-3 to validate several processors and methods to derive water quality products with best performing atmospheric correction processor applied. For validation we used in-situ data from 49 sampling points across four different lakes, collected during 2018. Level-2 optical water quality products, such as chlorophyll-a and the total suspended matter concentrations, water transparency, and the absorption coefficient of the colored dissolved organic matter were compared against in-situ data. Along with the water quality products, the optical water types were obtained, because in lakes one-method-to-all approach is not working well due to the optical complexity of the inland waters. The dynamics of the optical water types of the two sensors were generally in agreement. In most cases, the band ratio algorithms for both sensors with optical water type guidance gave the best results. The best algorithms to obtain the Level-2 water quality products were different for MSI and OLCI. MSI always outperformed OLCI, with R² 0.84–0.97 for different water quality products. Deriving the water quality parameters with optical water type classification should be the first step in estimating the ecological status of the lakes with remote sensing.

The European Space Agency’s Copernicus satellites Sentinel-2 and Sentinel-3 provide observations with high spectral, spatial, and temporal resolution which can be used to monitor inland and coastal waters. Such waters are optically complex, and the water color may vary from completely clear to dark brown. The main factors influencing water color are colored dissolved organic matter, phytoplankton, and suspended sediments. Recently, there has been a growing interest in the use of the optical water type (OWT) classification in the remote sensing of ocean color. Such classification helps to clarify relationships between different properties inside a certain class and quantify variation between classes. In this study, we present a new OWT classification based on the in situ measurements of reflectance spectra for boreal region lakes and coastal areas without extreme optical conditions. This classification divides waters into five OWT (Clear, Moderate, Turbid, Very Turbid, and Brown) and shows that different OWTs have different remote sensing reflectance spectra and that each OWT is associated with a specific bio-optical condition. Developed OWTs are distinguishable by both the MultiSpectral Instrument (MSI) and the Ocean and Land Color Instrument (OLCI) sensors, and the accuracy of the OWT assignment was 95% for both the MSI and OLCI bands. To determine OWT from MSI images, we tested different atmospheric correction (AC) processors, namely ACOLITE, C2RCC, POLYMER, and Sen2Cor and for OLCI images, we tested AC processors ALTNNA, C2RCC, and L2. The C2RCC AC processor was the most accurate and reliable for use with MSI and OLCI images to estimate OWTs.

Currently, water monitoring programs are mainly based on in situ measurements; however, this approach is time-consuming, expensive, and may not reflect the status of the whole water body. The availability of Multispectral Imager (MSI) and Ocean and Land Colour Instrument (OLCI) free data with high spectral, spatial, and temporal resolution has increased the potential of adding remote sensing techniques into monitoring programs, leading to improvement of the quality of monitoring water. This study introduced an optical water type guided approach for boreal regions inland and coastal waters to estimate optical water quality parameters, such as the concentration of chlorophyll-a (Chl-a) and total suspended matter (TSM), the absorption coefficient of coloured dissolved organic matter at a wavelength of 442 nm (aCDOM(442)), and the Secchi disk depth, from hyperspectral, OLCI, and MSI reflectance data. This study was based on data from 51 Estonian and Finnish lakes and from the Baltic Sea coastal area, which altogether were used in 415 in situ measurement stations and covered a wide range of optical water quality parameters (Chl-a: 0.5–215.2 mg·m⁻³; TSM: 0.6–46.0 mg·L⁻¹; aCDOM(442): 0.4–43.7 m⁻¹; and Secchi disk depth: 0.2–12.2 m). For retrieving optical water quality parameters from reflectance spectra, we tested 132 empirical algorithms. The study results describe the best algorithm for each optical water type for each spectral range and for each optical water quality parameter. The correlation was high, from 0.87 up to 0.93, between the in situ measured optical water quality parameters and the parameters predicted by the optical water type guided approach.

The Sentinel-3 mission launched its first satellite Sentinel-3A in 2016 to be followed by Sentinel-3B and Sentinel-3C to provide long-term operational measurements over Earth. Sentinel-3A and 3B are in full operational status, allowing global coverage in less than two days, usable to monitor optical water quality and provide data for environmental studies. However, due to limited ground truth data, the product quality has not yet been analyzed in detail with the fiducial reference measurement (FRM) dataset. Here, we use the fully characterized ground truth FRM dataset for validating Sentinel-3A Ocean and Land Colour Instrument (OLCI) radiometric products over optically complex Estonian inland waters and Baltic Sea coastal areas. As consistency between satellite and local data depends on uncertainty in field measurements, filtering of the in situ data has been made based on the uncertainty for the final comparison. We have compared various atmospheric correction methods and found POLYMER (POLYnomial-based algorithm applied to MERIS) to be most suitable for optically complex waters under study in terms of product accuracy, amount of usable data and also being least influenced by the adjacency effect.

Inland waters play a critical role in our drinking water supply. Additionally, they are important providers of food and recreation possibilities. Inland waters are known to be optically complex and more diverse than marine or ocean waters. The optical properties of natural waters are influenced by three different and independent sources: phytoplankton, suspended matter, and colored dissolved organic matter. Thus, the remote sensing of these waters is more challenging. Different types of waters need different approaches to obtain correct water quality products; therefore, the first step in remote sensing of lakes should be the classification of the water types. The classification of optical water types (OWTs) is based on the differences in the reflectance spectra of the lake water. This classification groups lake and coastal waters into five optical classes: Clear, Moderate, Turbid, Very Turbid, and Brown. We studied the OWTs in three different Latvian lakes: Burtnieks, Lubans, and Razna, and in a large Estonian lake, Lake Võrtsjärv. The primary goal of this study was a comparison of two different Copernicus optical instrument data for optical classification in lakes: Ocean and Land Color Instrument (OLCI) on Sentinel-3 and Multispectral Instrument (MSI) on Sentinel-2. We found that both satellite OWT classifications in lakes were comparable (R² = 0.74). We were also able to study the spatial and temporal changes in the OWTs of the study lakes during 2017. The comparison between two satellites was carried out to understand if the classification of the OWTs with both satellites is compatible. Our results could give us not only a better overview of the changes in the lake water by studying the temporal and spatial variability of the OWTs, but also possibly better retrieval of Level 2 satellite products when using OWT guided approach.

Phytoplankton primary production (PP) in lakes play an important role in the global carbon cycle. However, monitoring the PP in lakes with traditional complicated and costly in situ sampling methods are impossible due to the large number of lakes worldwide (estimated to be 117 million lakes). In this study, bio-optical modelling and remote sensing data (Sentinel-3 Ocean and Land Colour Instrument) was combined to investigate the spatial and temporal variation of PP in four Baltic lakes during 2018. The model used has three input parameters: concentration of chlorophyll-a, the diffuse attenuation coefficient, and incident downwelling irradiance. The largest of our studied lakes, Võrtsjärv (270 km²), had the highest total yearly estimated production (61 Gg C y⁻¹) compared to the smaller lakes Lubans (18 Gg C y⁻¹) and Razna (7 Gg C y⁻¹). However, the most productive was the smallest studied, Lake Burtnieks (40.2 km²); although the total yearly production was 13 Gg C y⁻¹, the daily average areal production was 910 mg C m⁻² d⁻¹ in 2018. Even if lake size plays a significant role in the total PP of the lake, the abundance of small and medium-sized lakes would sum up to a significant contribution of carbon fixation. Our method is applicable to larger regions to monitor the spatial and temporal variability of lake PP.