The structure of the microbial food web was studied in six estuary areas along the eastern Adriatic coast during March, July and October 2012. Limitation by phosphorus, not nitrogen, was a common feature for all studied estuaries. Heterotrophic bacteria and autotrophic picoplankton (APP) (particularly picoeukaryotes andSynechococcus) can reach notable abundances and biomasses, suggesting potential importance of the picoplankton community in P-limited estuarine environments. The main features of the microbial community structure in these environments included: (1) higher heterotrophic biomass in comparison to autotrophic biomass within the picoplankton community; (2) general domination of picoeukaryotes within the APP community, and increase of absolute and relative biomass of prokaryotic autotrophs (ProchlorococcusandSynechococcus) in the total APP in P-limited conditions; (3) domination ofSynechococcusoverProchlorococcusbiomass in all studied conditions, and common spatial distribution of these two groups of cyanobacteria, which was mostly determined by concentration of phosphorus; (4) relatively high contribution (about 50%) of LNA bacteria in the total bacterial abundance; and (5) relatively high contribution (about 33%) of heterotrophic pico-flagellates in the total flagellate abundance.

Southern Adriatic (Eastern Mediterranean Sea) is a region strongly dominated by large-scale oceanographic processes and local open-ocean dense water formation. In this study, picoplankton biomass, distribution, and activity were examined during two oceanographic cruises and analyzed in relation to environmental parameters and hydrographic conditions comparing pre and post-winter phases (December 2015, April 2016). Picoplankton density with the domination of autotrophic biomasses was higher in the pre-winter phase when significant amounts of picoaoutotrophs were also found in the meso-and bathy-pelagic layers, while Synechococcus dominated the picoautotrophic group. Higher values of bacterial production and domination of High Nucleic Acid content bacteria (HNA bacteria) were found in deep waters, especially during the post-winter phase, suggesting that bacteria can have an active role in the deep-sea environment. Aerobic anoxygenic phototrophic bacteria accounted for a small proportion of total heterotrophic bacteria but contributed up to 4% of bacterial carbon content. Changes in the picoplankton community were mainly driven by nutrient availability, heterotrophic nanoflagellates abundance, and water mass movements and mixing. Our results suggest that autotrophic and heterotrophic members of the picoplankton community are an important carbon source in the food web in the deep-sea, as well as in the epipelagic layer. Besides, viral lysis may affect the activity of the picoplankton community and enrich the water column with dissolved organic carbon.

Seasonal dynamics of bacterial and heterotrophic nanoflagellate (HNF) species assemblages were analysed in Kaštela Bay (middle Adriatic Sea). Dominant patterns identified were: (1) during summer and autumn bacterial abundance was mainly controlled by HNF grazing (top-down), whereas HNF abundance was controlled by bacterial abundance (bottom-up); (2) during winter and spring the coupling between bacteria and HNF was very weak, and bacterial abundance was mainly controlled by resources supply (bottom-up), whereas HNF abundance was controlled by micro-zooplankton grazing (top-down); (3) throughout the year, both bacterial and HNF species assemblages alternated with two periods of stable abundance, first with high and second with low values; (4) top-down effect was dominant in bacterial switching from stable abundance with high values to stable abundance with low values, whereas bottom-up model dominated in inverse process; and vice versa for HNF.