Subrata Bhattacharjee

Dr. Subrata Bhattacharjee

Biomedical Engineering, Pusan National University, Busan, Republic of Korea
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orcid

Research Focus & Metrics

Academic Career Length

8Years (2019-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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6 January 2020 in Current Medical Imaging
Verified
Journal Article
Closed access
BCBoo-Kyeong Choi
Boo-Kyeong Choi
NVNuwan Madusanka Vithanage
Nuwan Madusanka Vithanage
HCHeung-Kook Choi
Heung-Kook Choi
JSJae-Hong So
Jae-Hong So
CKCho-Hee Kim
Cho-Hee Kim
DPDeekshitha Prakash
Deekshitha Prakash
Background: In this study, we used a convolutional neural network (CNN) to classify Alzheimer’s disease (AD), mild cognitive impairment (MCI), and normal control (NC) subjects based on images of the hippocampus region extracted from magnetic resonance (MR) images of the brain. Materials and Methods: The datasets used in this study were obtained from the Alzheimer's Disease Neuroimaging Initiative (ADNI). To segment the hippocampal region automatically, the patient brain MR images were matched to the International Consortium for Brain Mapping template (ICBM) using 3D-Slicer software. Using prior knowledge and anatomical annotation label information, the hippocampal region was automatically extracted from the brain MR images. Results: The area of the hippocampus in each image was preprocessed using local entropy minimization with a bi-cubic spline model (LEMS) by an inhomogeneity intensity correction method. To train the CNN model, we separated the dataset into three groups, namely AD/NC, AD/MCI, and MCI/NC. The prediction model achieved an accuracy of 92.3% for AD/NC, 85.6% for AD/MCI, and 78.1% for MCI/NC. Conclusion: The results of this study were compared to those of previous studies, and summarized and analyzed to facilitate more flexible analyses based on additional experiments. The classification accuracy obtained by the proposed method is highly accurate. These findings suggest that this approach is efficient and may be a promising strategy to obtain good AD, MCI and NC classification performance using small patch images of hippocampus instead of whole slide images.

21 February 2022
Verified
Conference Paper
Closed access
KIKobiljon Ikromjanov
Kobiljon Ikromjanov
Subrata BhattacharjeeSubrata Bhattacharjee
Subrata Bhattacharjee
YHYeong-Byn Hwang
Yeong-Byn Hwang
RSRashadul Islam Sumon
Rashadul Islam Sumon
HKHee-Cheol Kim
Hee-Cheol Kim
HCHeung-Kook Choi
Heung-Kook Choi
Prostate cancer (PCa) is the most frequently diagnosed non-skin malignancy in men and the second leading cause of fatality from cancer. The most prognostic marker for PCa is the Gleason grading system on histopathology images. Pathologists examine the Gleason grade on stained tissue specimens of Hematoxylin and Eosin (H&E) based on tumor structural growth patterns from whole slide image (WSI). According to the Gleason grading system, prostate cancers are scaled into five grades based on glandular patterns of differentiation. It varies from grade 1 (normal tumor) to grade 5 (abnormal tumor). Cancer cells that look similar to healthy cells receive a low score. Recent developments in Computer-Aided Detection (CAD) using Artificial Intelligence (AI), mainly Deep learning (DL) have brought the immense scope of automatic detection and recognition at better accuracy in adenocarcinoma like other medical diagnoses. Automated DL systems have delivered promising results from histopathological images to accurate grading of prostatic adenocarcinoma. This study aims to classify multiple patterns of images extracted from the WSI of a prostate biopsy based on the Gleason grading system. First, extract patches from the detected region of interest (ROI), then applying Vision Transformers (ViT) model for classification. Finally, the classified patches are scored and graded. The proposed deep learning model in this research will be able to assist the pathologist and other researchers to identify and treat of prostate cancer.

4 December 2019 in Cancers
Verified
Journal Article
Open access
PDF file
Subrata BhattacharjeeSubrata Bhattacharjee
Subrata Bhattacharjee
CKCho-Hee Kim
Cho-Hee Kim
HPHyeon-Gyun Park
Hyeon-Gyun Park
DPDeekshitha Prakash
Deekshitha Prakash
NVNuwan Madusanka Vithanage
Nuwan Madusanka Vithanage
HCHeung-Kook Choi
Heung-Kook Choi
Microscopic biopsy images are coloured in nature because pathologists use the haematoxylin and eosin chemical colour dyes for biopsy examinations. In this study, biopsy images are used for histological grading and the analysis of benign and malignant prostate tissues. The following PCa grades are analysed in the present study: benign, grade 3, grade 4, and grade 5. Biopsy imaging has become increasingly important for the clinical assessment of PCa. In order to analyse and classify the histological grades of prostate carcinomas, pixel-based colour moment descriptor (PCMD) and gray-level co-occurrence matrix (GLCM) methods were used to extract the most significant features for multilayer perceptron (MLP) neural network classification. Haar wavelet transformation was carried out to extract GLCM texture features, and colour features were extracted from RGB (red/green/blue) colour images of prostate tissues. The MANOVA statistical test was performed to select significant features based on F-values and P-values using the R programming language. We obtained an average highest accuracy of 92.7% using level-1 wavelet texture and colour features. The MLP classifier performed well, and our study shows promising results based on multi-feature classification of histological sections of prostate carcinomas.

24 July 2019 in Applied Sciences
Verified
Journal Article
Open access
PDF file
Subrata BhattacharjeeSubrata Bhattacharjee
Subrata Bhattacharjee
HPHyeon-Gyun Park
Hyeon-Gyun Park
CKCho-Hee Kim
Cho-Hee Kim
DPDeekshitha Prakash
Deekshitha Prakash
NVNuwan Madusanka Vithanage
Nuwan Madusanka Vithanage
HCHeung-Kook Choi
Heung-Kook Choi
An adenocarcinoma is a type of malignant cancerous tissue that forms from a glandular structure in epithelial tissue. Analyzed stained microscopic biopsy images were used to perform image manipulation and extract significant features for support vector machine (SVM) classification, to predict the Gleason grading of prostate cancer (PCa) based on the morphological features of the cell nucleus and lumen. Histopathology biopsy tissue images were used and categorized into four Gleason grade groups, namely Grade 3, Grade 4, Grade 5, and benign. The first three grades are considered malignant. K-means and watershed algorithms were used for color-based segmentation and separation of overlapping cell nuclei, respectively. In total, 400 images, divided equally among the four groups, were collected for SVM classification. To classify the proposed morphological features, SVM classification based on binary learning was performed using linear and Gaussian classifiers. The prediction model yielded an accuracy of 88.7% for malignant vs. benign, 85.0% for Grade 3 vs. Grade 4, 5, and 92.5% for Grade 4 vs. Grade 5. The SVM, based on biopsy-derived image features, consistently and accurately classified the Gleason grading of prostate cancer. All results are comparatively better than those reported in the literature.

12 November 2020 in Applied Sciences
Verified
Journal Article
Open access
PDF file
Subrata BhattacharjeeSubrata Bhattacharjee
Subrata Bhattacharjee
CKCho-Hee Kim
Cho-Hee Kim
DPDeekshitha Prakash
Deekshitha Prakash
HPHyeon-Gyun Park
Hyeon-Gyun Park
NCNam-Hoon Cho
Nam-Hoon Cho
HCHeung-Kook Choi
Heung-Kook Choi
Prostate carcinoma is caused when cells and glands in the prostate change their shape and size from normal to abnormal. Typically, the pathologist’s goal is to classify the staining slides and differentiate normal from abnormal tissue. In the present study, we used a computational approach to classify images and features of benign and malignant tissues using artificial intelligence (AI) techniques. Here, we introduce two lightweight convolutional neural network (CNN) architectures and an ensemble machine learning (EML) method for image and feature classification, respectively. Moreover, the classification using pre-trained models and handcrafted features was carried out for comparative analysis. The binary classification was performed to classify between the two grade groups (benign vs. malignant) and quantile-quantile plots were used to show their predicted outcomes. Our proposed models for deep learning (DL) and machine learning (ML) classification achieved promising accuracies of 94.0% and 92.0%, respectively, based on non-handcrafted features extracted from CNN layers. Therefore, these models were able to predict nearly perfectly accurately using few trainable parameters or CNN layers, highlighting the importance of DL and ML techniques and suggesting that the computational analysis of microscopic anatomy will be essential to the future practice of pathology.

31 December 2019 in Journal of Multimedia Information System
Verified
Journal Article
Open access
PDF file
DPDeekshitha Prakash
Deekshitha Prakash
NVNuwan Madusanka Vithanage
Nuwan Madusanka Vithanage
Subrata BhattacharjeeSubrata Bhattacharjee
Subrata Bhattacharjee
HPHyeon-Gyun Park
Hyeon-Gyun Park
CKCho-Hee Kim
Cho-Hee Kim
HCHeung-Kook Choi
Heung-Kook Choi
한국멀티미디어학회(The Journal of Curriculum Evaluation)