Marjetka Podobnik

Prof. Dr. Marjetka Podobnik

National Institute of Chemistry, Hajdrihova 19, 1000 Ljubljana, Slovenia
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Research Focus & Metrics

Academic Career Length

18Years (2009-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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15 December 2017 in Science
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TLTea Lenarčič
Tea Lenarčič
IAIsabell Albert
Isabell Albert
HBHannah Böhm
Hannah Böhm
VHVesna Hodnik
Vesna Hodnik
KPKatja Pirc
Katja Pirc
TNThorsten Nürnberger
Thorsten Nürnberger
An extra sugar protects: Many microbial pathogens produce proteins that are toxic to the cells that they are targeting. Broad-leaved plants are susceptible to NLP (necrosis and ethylene-inducing peptide 1–like protein) toxins. Lenarčič et al. identified the receptors for NLP toxins to be GIPC (glycosylinositol phosphorylceramide) sphingolipids (see the Perspective by Van den Ackerveken). Their findings reveal why these toxins only attack broad-leaved plants (so-called eudicots): If the sphingolipid carries just two hexoses, as is the case for eudicots, the toxin binds and causes cell lysis. But in monocots with sphingolipids that have three hexoses, the toxin is ineffective. Science , this issue p. 1431 ; see also p. 1383

5 July 2019 in Science Advances
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AKAndreja Kežar
Andreja Kežar
LKLuka Kavčič
Luka Kavčič
MPMartin Polák
Martin Polák
JNJiří Nováček
Jiří Nováček
IAIon Gutierrez Aguirre
Ion Gutierrez Aguirre
MPMarjetka Podobnik
Marjetka Podobnik
Structural and functional studies of the coat protein regions of potato virus Y reveal crucial roles in viral infectivity.

1 November 2009 in Journal of Biological Chemistry
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MPMarjetka Podobnik
Marjetka Podobnik
RTRicha Tyagi
Richa Tyagi
NMNishad Matange
Nishad Matange
UDUrška Dermol
Urška Dermol
AGArun K. Gupta
Arun K. Gupta
SVSandhya S. Visweswariah
Sandhya S. Visweswariah
Mycobacterium tuberculosis utilizes many mechanisms to establish itself within the macrophage, and bacterially derived cAMP is important in modulating the host cellular response. Although the genome of M. tuberculosis is endowed with a number of mammalian-like adenylyl cyclases, only a single cAMP phosphodiesterase has been identified that can decrease levels of cAMP produced by the bacterium. We present the crystal structure of the full-length and sole cAMP phosphodiesterase, Rv0805, found in M. tuberculosis, whose orthologs are present only in the genomes of slow growing and pathogenic mycobacteria. The dimeric core catalytic domain of Rv0805 adopts a metallophosphoesterase-fold, and the C-terminal region builds the active site and contributes to multiple substrate utilization. Localization of Rv0805 to the cell wall is dependent on its C terminus, and expression of either wild type or mutationally inactivated Rv0805 in M. smegmatis alters cell permeability to hydrophobic cytotoxic compounds. Rv0805 may therefore play a key role in the pathogenicity of mycobacteria, not only by hydrolyzing bacterial cAMP, but also by moonlighting as a protein that can alter cell wall functioning.

19 June 2017 in Philosophical Transactions of the Royal Society B: Biological Sciences
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MPMarjetka Podobnik
Marjetka Podobnik
MKMatic Kisovec
Matic Kisovec
GAGregor Anderluh
Gregor Anderluh
Aerolysin-like pore-forming proteins are an important family of proteins able to efficiently damage membranes of target cells by forming transmembrane pores. They are characterized by a unique domain organization and mechanism of action that involves extensive conformational rearrangements. Although structures of soluble forms of many different members of this family are well understood, the structures of pores and their mechanism of assembly have been described only recently. The pores are characterized by well-defined β-barrels, which are devoid of any vestibular regions commonly found in other protein pores. Many members of this family are bacterial toxins; therefore, structural details of their transmembrane pores, as well as the mechanism of pore formation, are an important base for future drug design. Stability of pores and other properties, such as specificity for some cell surface molecules, make this family of proteins a useful set of molecular tools for molecular recognition and sensing in cell biology. This article is part of the themed issue ‘Membrane pores: from structure and assembly, to medicine and technology’.

1 December 2017 in Seminars in Cell & Developmental Biology
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MPMarjetka Podobnik
Marjetka Podobnik
GAGregor Anderluh
Gregor Anderluh

1 July 2021 in Biochimica et Biophysica Acta (BBA) - Biomembranes
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NPNejc Petrišič
Nejc Petrišič
MKMirijam Kozorog
Mirijam Kozorog
SASaša Aden
Saša Aden
MPMarjetka Podobnik
Marjetka Podobnik
GAGregor Anderluh
Gregor Anderluh
Listeria monocytogenes is an intracellular food-borne pathogen that causes listeriosis, a severe and potentially life-threatening disease. Listeria uses a number of virulence factors to proliferate and spread to various cells and tissues. In this process, three bacterial virulence factors, the pore-forming protein listeriolysin O and phospholipases PlcA and PlcB, play a crucial role. Listeriolysin O belongs to a family of cholesterol-dependent cytolysins that are mostly expressed by gram-positive bacteria. Its unique structural features in an otherwise conserved three-dimensional fold, such as the acidic triad and proline-glutamate-serine-threonine-like sequence, enable the regulation of its intracellular activity as well as distinct extracellular functions. The stability of listeriolysin O is pH- and temperature-dependent, and this provides another layer of control of its activity in cells. Moreover, many recent studies have demonstrated a unique mechanism of pore formation by listeriolysin O, i.e., the formation of arc-shaped oligomers that can subsequently fuse to form membrane defects of various shapes and sizes. During listerial invasion of host cells, these membrane defects can disrupt phagosome membranes, allowing bacteria to escape into the cytosol and rapidly multiply. The activity of listeriolysin O is profoundly dependent on the amount and accessibility of cholesterol in the lipid membrane, which can be modulated by the phospholipase PlcB. All these prominent features of listeriolysin O play a role during different stages of the L. monocytogenes life cycle by promoting the proliferation of the pathogen while mitigating excessive damage to its replicative niche in the cytosol of the host cell.