Henry F Houskeeper

Mr. Henry F Houskeeper

orcid

Research Focus & Metrics

Academic Career Length

8Years (2019-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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5 March 2021 in Communications Biology
Verified
Journal Article
Open access
PDF file
MMMeredith L. McPherson
Meredith L. McPherson
DFDennis J. I. Finger
Dennis J. I. Finger
HHHenry F Houskeeper
Henry F Houskeeper
TBThomas Bell
Thomas Bell
MCMark H. Carr
Mark H. Carr
RKRaphael Kudela
Raphael Kudela
Climate change is responsible for increased frequency, intensity, and duration of extreme events, such as marine heatwaves (MHWs). Within eastern boundary current systems, MHWs have profound impacts on temperature-nutrient dynamics that drive primary productivity. Bull kelp (Nereocystis luetkeana) forests, a vital nearshore habitat, experienced unprecedented losses along 350 km of coastline in northern California beginning in 2014 and continuing through 2019. These losses have had devastating consequences to northern California communities, economies, and fisheries. Using a suite of in situ and satellite-derived data, we demonstrate that the abrupt ecosystem shift initiated by a multi-year MHW was preceded by declines in keystone predator population densities. We show strong evidence that northern California kelp forests, while temporally dynamic, were historically resilient to fluctuating environmental conditions, even in the absence of key top predators, but that a series of coupled environmental and biological shifts between 2014 and 2016 resulted in the formation of a persistent, altered ecosystem state with low primary productivity. Based on our findings, we recommend the implementation of ecosystem-based and adaptive management strategies, such as (1) monitoring the status of key ecosystem attributes: kelp distribution and abundance, and densities of sea urchins and their predators, (2) developing management responses to threshold levels of these attributes, and (3) creating quantitative restoration suitability indices for informing kelp restoration efforts.

23 March 2023 in PLOS ONE
Verified
Journal Article
Open access
PDF file
TBThomas Bell
Thomas Bell
VSVienna R. Saccomanno
Vienna R. Saccomanno
KCKatherine C. Cavanaugh
Katherine C. Cavanaugh
HHHenry F Houskeeper
Henry F Houskeeper
NENorah Eddy
Norah Eddy
MGMary Gleason
Mary Gleason
Giant kelp and bull kelp forests are increasingly at risk from marine heatwave events, herbivore outbreaks, and the loss or alterations in the behavior of key herbivore predators. The dynamic floating canopy of these kelps is well-suited to study via satellite imagery, which provides high temporal and spatial resolution data of floating kelp canopy across the western United States and Mexico. However, the size and complexity of the satellite image dataset has made ecological analysis difficult for scientists and managers. To increase accessibility of this rich dataset, we created Kelpwatch, a web-based visualization and analysis tool. This tool allows researchers and managers to quantify kelp forest change in response to disturbances, assess historical trends, and allow for effective and actionable kelp forest management. Here, we demonstrate how Kelpwatch can be used to analyze long-term trends in kelp canopy across regions, quantify spatial variability in the response to and recovery from the 2014 to 2016 marine heatwave events, and provide a local analysis of kelp canopy status around the Monterey Peninsula, California. We found that 18.6% of regional sites displayed a significant trend in kelp canopy area over the past 38 years and that there was a latitudinal response to heatwave events for each kelp species. The recovery from heatwave events was more variable across space, with some local areas like Bahía Tortugas in Baja California Sur showing high recovery while kelp canopies around the Monterey Peninsula continued a slow decline and patchy recovery compared to the rest of the Central California region. Kelpwatch provides near real time spatial data and analysis support and makes complex earth observation data actionable for scientists and managers, which can help identify areas for research, monitoring, and management efforts.

4 September 2019 in Remote Sensing
Verified
Journal Article
Open access
PDF file
RKRaphael Kudela
Raphael Kudela
SHStanford B. Hooker
Stanford B. Hooker
HHHenry F Houskeeper
Henry F Houskeeper
MMMeredith McPherson
Meredith McPherson
Presently, operational ocean color satellite sensors are designed with a legacy perspective for sampling the open ocean primarily in the visible domain, while high spatial resolution sensors such as Sentinel-2, Sentinel-3, and Landsat8 are increasingly used for observations of coastal and inland water quality. Next-generation satellites such as the NASA Plankton, Aerosol, Cloud and ocean Ecosystem (PACE) and Surface Biology and Geology (SBG) sensors are anticipated to increase spatial and/or spectral resolution. An important consideration is determining the minimum signal-to-noise ratio (SNR) needed to retrieve typical biogeochemical products, such as biomass, in aquatic systems, and whether legacy sensors can be used for algorithm development. Here, we evaluate SNR and remote-sensing reflectance (Rrs) uncertainty for representative bright and dim targets in coastal California, USA. The majority of existing sensors fail to meet proposed criteria. Despite these limitations, uncertainties in retrieved biomass as chlorophyll or normalized difference vegetation index (NDVI) remain well below a proposed threshold of 17.5%, suggesting that existing sensors can be used in coastal systems. Existing commercially available in-water and airborne instrument suites can exceed all proposed thresholds for SNR and Rrs uncertainty, providing a path forward for collection of calibration and validation data for future satellite missions.

30 January 2020 in Biogeosciences
Verified
Journal Article
Open access
PDF file
SHStanford B. Hooker
Stanford B. Hooker
Atsushi MatsuokaAtsushi Matsuoka
Atsushi Matsuoka
RKRaphael Kudela
Raphael Kudela
YYYouhei Yamashita
Youhei Yamashita
KSKoji Suzuki
Koji Suzuki
HHHenry F Houskeeper
Henry F Houskeeper
This study establishes an optical inversion scheme for deriving the absorption coefficient of colored (or chromophoric, depending on the literature) dissolved organic material (CDOM) at the 440 nm wavelength, which can be applied to global water masses with near-equal efficacy. The approach uses a ratio of diffuse attenuation coefficient spectral end-members, i.e., a short- and long-wavelength pair. The global perspective is established by sampling “extremely” clear water plus a generalized extent in turbidity and optical properties that each span 3 decades of dynamic range. A unique data set was collected in oceanic, coastal, and inland waters (as shallow as 0.6 m) from the North Pacific Ocean, the Arctic Ocean, Hawaii, Japan, Puerto Rico, and the western coast of the United States. The data were partitioned using subjective categorizations to define a validation quality subset of conservative water masses (i.e., the inflow and outflow of properties constrain the range in the gradient of a constituent) plus 15 subcategories of more complex water masses that were not necessarily evolving conservatively. The dependence on optical complexity was confirmed with an objective methodology based on a cluster analysis technique. The latter defined five distinct classes with validation quality data present in all classes, but which also decreased in percent composition as a function of increasing class number and optical complexity. Four algorithms based on different validation quality end-members were validated with accuracies of 1.2 %–6.2 %, wherein pairs with the largest spectral span were most accurate. Although algorithm accuracy decreased with the inclusion of more subcategories containing nonconservative water masses, changes to the algorithm fit were small when a preponderance of subcategories were included. The high accuracy for all end-member algorithms was the result of data acquisition and data processing improvements, e.g., increased vertical sampling resolution to less than 1 mm (with pressure transducer precision of 0.03–0.08 mm) and a boundary constraint to mitigate wave-focusing effects, respectively. An independent evaluation with a historical database confirmed the consistency of the algorithmic approach and its application to quality assurance, e.g., to flag data outside expected ranges, identify suspect spectra, and objectively determine the in-water extrapolation interval by converging agreement for all applicable end-member algorithms. The legacy data exhibit degraded performance (as 44 % uncertainty) due to a lack of high-quality near-surface observations, especially for clear waters wherein wave-focusing effects are problematic. The novel optical approach allows the in situ estimation of an in-water constituent in keeping with the accuracy obtained in the laboratory.

6 January 2022 in PLOS ONE
Verified
Journal Article
Open access
PDF file
HHHenry F Houskeeper
Henry F Houskeeper
IRIsaac S. Rosenthal
Isaac S. Rosenthal
KCKatherine C. Cavanaugh
Katherine C. Cavanaugh
CPCamille Pawlak
Camille Pawlak
LTLaura Trouille
Laura Trouille
TBTom W. Bell
Tom W. Bell
Giant kelp populations that support productive and diverse coastal ecosystems at temperate and subpolar latitudes of both hemispheres are vulnerable to changing climate conditions as well as direct human impacts. Observations of giant kelp forests are spatially and temporally uneven, with disproportionate coverage in the northern hemisphere, despite the size and comparable density of southern hemisphere kelp forests. Satellite imagery enables the mapping of existing and historical giant kelp populations in understudied regions, but automating the detection of giant kelp using satellite imagery requires approaches that are robust to the optical complexity of the shallow, nearshore environment. We present and compare two approaches for automating the detection of giant kelp in satellite datasets: one based on crowd sourcing of satellite imagery classifications and another based on a decision tree paired with a spectral unmixing algorithm (automated using Google Earth Engine). Both approaches are applied to satellite imagery (Landsat) of the Falkland Islands or Islas Malvinas (FLK), an archipelago in the southern Atlantic Ocean that supports expansive giant kelp ecosystems. The performance of each method is evaluated by comparing the automated classifications with a subset of expert-annotated imagery (8 images spanning the majority of our continuous timeseries, cumulatively covering over 2,700 km of coastline, and including all relevant sensors). Using the remote sensing approaches evaluated herein, we present the first continuous timeseries of giant kelp observations in the FLK region using Landsat imagery spanning over three decades. We do not detect evidence of long-term change in the FLK region, although we observe a recent decline in total canopy area from 2017–2021. Using a nitrate model based on nearby ocean state measurements obtained from ships and incorporating satellite sea surface temperature products, we find that the area of giant kelp forests in the FLK region is positively correlated with the nitrate content observed during the prior year. Our results indicate that giant kelp classifications using citizen science are approximately consistent with classifications based on a state-of-the-art automated spectral approach. Despite differences in accuracy and sensitivity, both approaches find high interannual variability that impedes the detection of potential long-term changes in giant kelp canopy area, although recent canopy area declines are notable and should continue to be monitored carefully.

31 March 2024 in Remote Sensing
Verified
Journal Article
Open access
PDF file
RKRaphael Kudela
Raphael Kudela
SHStanford B. Hooker
Stanford B. Hooker
LGLiane Guild
Liane Guild
HHHenry F Houskeeper
Henry F Houskeeper
NTNiky Taylor
Niky Taylor
The launch of the NASA Plankton, Aerosol, Cloud, ocean Ecosystem (PACE) and the Surface Biology and Geology (SBG) satellite sensors will provide increased spectral resolution compared to existing platforms. These new sensors will require robust calibration and validation datasets, but existing field-based instrumentation is limited in its availability and potential for geographic coverage, particularly for coastal and inland waters, where optical complexity is substantially greater than in the open ocean. The minimum signal-to-noise ratio (SNR) is an important metric for assessing the reliability of derived biogeochemical products and their subsequent use as proxies, such as for biomass, in aquatic systems. The SNR can provide insight into whether legacy sensors can be used for algorithm development as well as calibration and validation activities for next-generation platforms. We extend our previous evaluation of SNR and associated uncertainties for representative coastal and inland targets to include the imaging sensors PRISM and AVIRIS-NG, the airborne-deployed C-AIR radiometers, and the shipboard HydroRad and HyperSAS radiometers, which were not included in the original analysis. Nearly all the assessed hyperspectral sensors fail to meet proposed criteria for SNR or uncertainty in remote sensing reflectance (Rrs) for some part of the spectrum, with the most common failures (>20% uncertainty) below 400 nm, but all the sensors were below the proposed 17.5% uncertainty for derived chlorophyll-a. Instrument suites for both in-water and airborne platforms that are capable of exceeding all the proposed thresholds for SNR and Rrs uncertainty are commercially available. Thus, there is a straightforward path to obtaining calibration and validation data for current and next-generation sensors, but the availability of suitable high spectral resolution sensors is limited.