Raphael Kudela

Dr. Raphael Kudela

Ocean Sciences Department, University of California, A-461 Earth & Marine Sciences Bldg., Santa Cruz, CA 95064, USA
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Research Focus & Metrics

Academic Career Length

31Years (1996-Present)

(Calculated once Scilit publication data is synced: current year − year of first publication + 1)

Representative Publications

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1 November 2015 in Harmful Algae
Verified
Journal Article
Closed access
MWMark L. Wells
Mark L. Wells
Vera L. TrainerVera L. Trainer
Vera L. Trainer
TSTheodore J. Smayda
Theodore J. Smayda
BKBengt Karlson
Bengt Karlson
CTCharles Trick
Charles Trick
WCWilliam P. Cochlan
William P. Cochlan

15 January 2011 in Annual Review of Marine Science
Verified
Journal Article
Closed access
JZJonathan P. Zehr
Jonathan P. Zehr
RKRaphael Kudela
Raphael Kudela
The marine nitrogen (N) cycle controls the productivity of the oceans. This cycle is driven by complex biogeochemical transformations, including nitrogen fixation, denitrification, and assimilation and anaerobic ammonia oxidation, mediated by microorganisms. New processes and organisms continue to be discovered, complicating the already complex picture of oceanic N cycling. Genomics research has uncovered the diversity of nitrogen metabolism strategies in phytoplankton and bacterioplankton. The elemental ratios of nutrients in biological material are more flexible than previously believed, with implications for vertical export of carbon and associated nutrients to the deep ocean. Estimates of nitrogen fixation and denitrification continue to be modified, and anaerobic ammonia oxidation has been identified as a new process involved in denitrification in oxygen minimum zones. The nitrogen cycle in the oceans is an integral feature of the function of ocean ecosystems and will be a central player in how oceans respond during global environmental change.

5 March 2021 in Communications Biology
Verified
Journal Article
Open access
PDF file
MMMeredith L. McPherson
Meredith L. McPherson
DFDennis J. I. Finger
Dennis J. I. Finger
HHHenry F Houskeeper
Henry F Houskeeper
TBThomas Bell
Thomas Bell
MCMark H. Carr
Mark H. Carr
RKRaphael Kudela
Raphael Kudela
Climate change is responsible for increased frequency, intensity, and duration of extreme events, such as marine heatwaves (MHWs). Within eastern boundary current systems, MHWs have profound impacts on temperature-nutrient dynamics that drive primary productivity. Bull kelp (Nereocystis luetkeana) forests, a vital nearshore habitat, experienced unprecedented losses along 350 km of coastline in northern California beginning in 2014 and continuing through 2019. These losses have had devastating consequences to northern California communities, economies, and fisheries. Using a suite of in situ and satellite-derived data, we demonstrate that the abrupt ecosystem shift initiated by a multi-year MHW was preceded by declines in keystone predator population densities. We show strong evidence that northern California kelp forests, while temporally dynamic, were historically resilient to fluctuating environmental conditions, even in the absence of key top predators, but that a series of coupled environmental and biological shifts between 2014 and 2016 resulted in the formation of a persistent, altered ecosystem state with low primary productivity. Based on our findings, we recommend the implementation of ecosystem-based and adaptive management strategies, such as (1) monitoring the status of key ecosystem attributes: kelp distribution and abundance, and densities of sea urchins and their predators, (2) developing management responses to threshold levels of these attributes, and (3) creating quantitative restoration suitability indices for informing kelp restoration efforts.

5 June 2017 in Geophysical Research Letters
Verified
Journal Article
Open access
PDF file
JRJohn Ryan
John Ryan
RKRaphael Kudela
Raphael Kudela
JBJames Birch
James Birch
MBM. Blum
M. Blum
Holly BowersHolly Bowers
Holly Bowers
YZY. Zhang
Y. Zhang
An ecologically and economically disruptive harmful algal bloom (HAB) affected much of the northeast Pacific margin in 2015, during a prolonged oceanic warm anomaly. Caused by diatoms of the genus Pseudo‐nitzschia, this HAB produced the highest particulate concentrations of the biotoxin domoic acid (DA) ever recorded in Monterey Bay, California. Bloom inception followed strong upwelling during the spring transition, which introduced nutrients and eliminated the warm anomaly locally. Subsequently, moderate and intermittent upwelling created favorable conditions for growth and accumulation of HAB biomass, which was dominated by a highly toxigenic species, P. australis. High cellular DA concentrations were associated with available nitrogen for DA synthesis coincident with silicate exhaustion. This nutrient influence resulted from two factors: (1) disproportionate depletion of silicate in upwelling source waters during the warm anomaly, the most severe depletion observed in 24 years, and (2) silicate uptake by the dense diatom bloom.

16 February 2023 in Scientific Data
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Journal Article
Open access
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MLMoritz Lehmann
Moritz Lehmann
DGDaniela Gurlin
Daniela Gurlin
NPNima Pahlevan
Nima Pahlevan
KAKrista Alikas
Krista Alikas
TCTed Conroy
Ted Conroy
LYLinwei Yue
Linwei Yue
The development of algorithms for remote sensing of water quality (RSWQ) requires a large amount of in situ data to account for the bio-geo-optical diversity of inland and coastal waters. The GLObal Reflectance community dataset for Imaging and optical sensing of Aquatic environments (GLORIA) includes 7,572 curated hyperspectral remote sensing reflectance measurements at 1 nm intervals within the 350 to 900 nm wavelength range. In addition, at least one co-located water quality measurement of chlorophyll a, total suspended solids, absorption by dissolved substances, and Secchi depth, is provided. The data were contributed by researchers affiliated with 59 institutions worldwide and come from 450 different water bodies, making GLORIA the de-facto state of knowledge of in situ coastal and inland aquatic optical diversity. Each measurement is documented with comprehensive methodological details, allowing users to evaluate fitness-for-purpose, and providing a reference for practitioners planning similar measurements. We provide open and free access to this dataset with the goal of enabling scientific and technological advancement towards operational regional and global RSWQ monitoring.

23 February 2009 in PLOS ONE
Verified
Journal Article
Open access
PDF file
DJDavid A. Jessup
David A. Jessup
MMMelissa A. Miller
Melissa A. Miller
JRJohn Ryan
John Ryan
HNHannah M. Nevins
Hannah M. Nevins
HKHeather A. Kerkering
Heather A. Kerkering
RKRaphael Kudela
Raphael Kudela
In November-December 2007 a widespread seabird mortality event occurred in Monterey Bay, California, USA, coincident with a massive red tide caused by the dinoflagellate Akashiwo sanguinea. Affected birds had a slimy yellow-green material on their feathers, which were saturated with water, and they were severely hypothermic. We determined that foam containing surfactant-like proteins, derived from organic matter of the red tide, coated their feathers and neutralized natural water repellency and insulation. No evidence of exposure to petroleum or other oils or biotoxins were found. This is the first documented case of its kind, but previous similar events may have gone undetected. The frequency and amplitude of red tides have increased in Monterey Bay since 2004, suggesting that impacts on wintering marine birds may continue or increase.